Pavir.Ha00307 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ha00307 T009488_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF094
M01602_2.00
Arabidopsis thaliana
VGCCGCCD

HGGCGGCB
PBM
Weirauch et al.(2014)
pTH8276
0.719 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ha00307.1.p AP2 36 87

Links

Other AP2 family TFs
Other Panicum virgatum TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF094 Arabidopsis thaliana AT1G06160 D 0.719
Gorai.004G057000 Gossypium raimondii Gorai.004G057000 I 0.708
mgf023779m Mimulus guttatus mgf023779m I 0.697
mgf022372m Mimulus guttatus mgf022372m I 0.701
mgf018693m Mimulus guttatus mgf018693m I 0.696
Cucsa.388530 Cucumis sativus Cucsa.388530 I 0.690
Cucsa.255340 Cucumis sativus Cucsa.255340 I 0.719
Cucsa.062330 Cucumis sativus Cucsa.062330 I 0.691
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.705
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.708
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.687
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.708
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I 0.696
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I 0.696
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.707
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I 0.717
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.705
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I 0.705
Gorai.001G253000 Gossypium raimondii Gorai.001G253000 I 0.705
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I 0.720
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I 0.694
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I 0.699
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.697
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.705
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.698
Eucgr.K03266 Eucalyptus grandis Eucgr.K03266 I 0.709
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I 0.704
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.697
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I 0.691
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I 0.688
29900.m001561 Ricinus communis 29900.m001561 I 0.682
29895.m000321 Ricinus communis 29895.m000321 I 0.703
VIT_07s0005g03230 Vitis vinifera VIT_07s0005g03230 I 0.710
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I 0.695
TRIUR3_29784 Triticum urartu TRIUR3_29784 I 0.715
TRIUR3_16508 Triticum urartu TRIUR3_16508 I 0.739
Traes_5DL_53D8DF9CD Triticum aestivum Traes_5DL_53D8DF9CD I 0.724
Traes_5BL_4E044468C Triticum aestivum Traes_5BL_4E044468C I 0.724
Traes_4DS_9C01B536B Triticum aestivum Traes_4DS_9C01B536B I 0.721
Traes_4DL_CB92B5ABB Triticum aestivum Traes_4DL_CB92B5ABB I 0.720
Traes_4BL_39AE2989D Triticum aestivum Traes_4BL_39AE2989D I 0.724
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I 0.739
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I 0.728
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I 0.728
VIT_07s0005g03260 Vitis vinifera VIT_07s0005g03260 I 0.710
VIT_07s0005g03270 Vitis vinifera VIT_07s0005g03270 I 0.711
VIT_14s0081g00730 Vitis vinifera VIT_14s0081g00730 I 0.705
29680.m001678 Ricinus communis 29680.m001678 I 0.714
29584.m000234 Ricinus communis 29584.m000234 I 0.696
Pm020604 Prunus mume Pm020604 I 0.697
Pm009382 Prunus mume Pm009382 I 0.705
Cla021850 Citrullus lanatus Cla021850 I 0.717
Cla007697 Citrullus lanatus Cla007697 I 0.705
Cla006080 Citrullus lanatus Cla006080 I 0.709
Ca_23170 Cicer arietinum Ca_23170 I 0.705
Ca_12221 Cicer arietinum Ca_12221 I 0.722
Ca_12219 Cicer arietinum Ca_12219 I 0.694
Ca_12081 Cicer arietinum Ca_12081 I 0.689
Ca_07754 Cicer arietinum Ca_07754 I 0.683
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I 0.736
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.683
SapurV1A.0006s0840 Salix purpurea SapurV1A.0006s0840 I 0.683
Pavir.J37124 Panicum virgatum Pavir.J37124 I 0.744
Pavir.J30299 Panicum virgatum Pavir.J30299 I 0.772
Pavir.J28684 Panicum virgatum Pavir.J28684 I 0.714
Pavir.J17768 Panicum virgatum Pavir.J17768 I 0.711
Pavir.J16149 Panicum virgatum Pavir.J16149 I 0.691
Pavir.J02630 Panicum virgatum Pavir.J02630 I 0.861
Pavir.J01078 Panicum virgatum Pavir.J01078 I 0.759
Pavir.Ib03413 Panicum virgatum Pavir.Ib03413 I 0.712
Pavir.Ia00066 Panicum virgatum Pavir.Ia00066 I 0.699
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I 0.784
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I 0.780
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I 0.691
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I 0.687
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.710
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I 0.707
chr5.CM0341.90.nc Lotus japonicus chr5.CM0341.90.nc I 0.684
chr1.CM0295.160.nd Lotus japonicus chr1.CM0295.160.nd I 0.694
Thhalv10008518m.g Eutrema salsugineum Thhalv10008518m.g I 0.677
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I 0.690
SapurV1A.3984s0010 Salix purpurea SapurV1A.3984s0010 I 0.683
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I 0.687
SapurV1A.0816s0060 Salix purpurea SapurV1A.0816s0060 I 0.683
SapurV1A.0270s0240 Salix purpurea SapurV1A.0270s0240 I 0.690
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I 0.689
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I 0.690
SapurV1A.0132s0310 Salix purpurea SapurV1A.0132s0310 I 0.683
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I 0.784
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I 0.771
Pavir.Ha00304 Panicum virgatum Pavir.Ha00304 I 0.828
MDP0000127134 Malus domestica MDP0000127134 I 0.705
Lus10042557.g Linum usitatissimum Lus10042557.g I 0.714
Lus10022935.g Linum usitatissimum Lus10022935.g I 0.715
Lus10022015.g Linum usitatissimum Lus10022015.g I 0.714
Lus10021873.g Linum usitatissimum Lus10021873.g I 0.685
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.705
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.705
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I 0.693
Gorai.013G186700 Gossypium raimondii Gorai.013G186700 I 0.683
Gorai.011G173000 Gossypium raimondii Gorai.011G173000 I 0.683
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.678
Gorai.007G145800 Gossypium raimondii Gorai.007G145800 I 0.695
MDP0000167207 Malus domestica MDP0000167207 I 0.705
MDP0000235313 Malus domestica MDP0000235313 I 0.705
MDP0000246808 Malus domestica MDP0000246808 I 0.691
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I 0.719
Pavir.Bb00653 Panicum virgatum Pavir.Bb00653 I 0.721
Pavir.Bb00652 Panicum virgatum Pavir.Bb00652 I 0.726
Pavir.Ba03491 Panicum virgatum Pavir.Ba03491 I 0.714
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I 0.744
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I 0.719
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.697
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I 0.691
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.705
MDP0000855671 Malus domestica MDP0000855671 I 0.706
MDP0000447570 Malus domestica MDP0000447570 I 0.691
MDP0000322279 Malus domestica MDP0000322279 I 0.696
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I 0.693
OBART03G03890 Oryza barthii OBART03G03890 I 0.681
LPERR07G06830 Leersia perrieri LPERR07G06830 I 0.720
LPERR03G03540 Leersia perrieri LPERR03G03540 I 0.681
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I 0.752
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.686
GSMUA_Achr5G19610_001 Musa acuminata GSMUA_Achr5G19610_001 I 0.712
GSMUA_Achr4G12060_001 Musa acuminata GSMUA_Achr4G12060_001 I 0.678
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I 0.690
GSMUA_Achr3G15550_001 Musa acuminata GSMUA_Achr3G15550_001 I 0.705
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I 0.698
GSMUA_Achr11G22020_001 Musa acuminata GSMUA_Achr11G22020_001 I 0.712
GRMZM5G837876 Zea mays GRMZM5G837876 I 0.757
GRMZM2G478965 Zea mays GRMZM2G478965 I 0.709
LPERR09G16380 Leersia perrieri LPERR09G16380 I 0.738
MLOC_43207 Hordeum vulgare MLOC_43207 I 0.739
MLOC_77420 Hordeum vulgare MLOC_77420 I 0.724
OB09G27130 Oryza brachyantha OB09G27130 I 0.741
MTR_7g096830 Medicago truncatula MTR_7g096830 I 0.741
MTR_7g096780 Medicago truncatula MTR_7g096780 I 0.694
MTR_1g074370 Medicago truncatula MTR_1g074370 I 0.689
MTR_1g070045 Medicago truncatula MTR_1g070045 I 0.680
MTR_1g070020 Medicago truncatula MTR_1g070020 I 0.680
MTR_1g070015 Medicago truncatula MTR_1g070015 I 0.680
MTR_1g070000 Medicago truncatula MTR_1g070000 I 0.680
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.683
MTR_1g069940 Medicago truncatula MTR_1g069940 I 0.705
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.705
MLOC_80197 Hordeum vulgare MLOC_80197 I 0.699
GRMZM2G381441 Zea mays GRMZM2G381441 I 0.683
GRMZM2G379652 Zea mays GRMZM2G379652 I 0.708
ATERF2 Arabidopsis lyrata fgenesh2_kg.8__70__AT5G47220.1 I 0.678
F775_52314 Aegilops tauschii F775_52314 I 0.724
F775_25471 Aegilops tauschii F775_25471 I 0.699
F775_22331 Aegilops tauschii F775_22331 I 0.720
F775_22020 Aegilops tauschii F775_22020 I 0.728
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I 0.739
BRADI1G00670 Brachypodium distachyon BRADI1G00670 I 0.697
BGIOSGA031313 Oryza indica BGIOSGA031313 I 0.738
BGIOSGA024429 Oryza indica BGIOSGA024429 I 0.712
BGIOSGA024428 Oryza indica BGIOSGA024428 I 0.724
BGIOSGA011868 Oryza indica BGIOSGA011868 I 0.681
AMTR_s00009p00143340 Amborella trichopoda AMTR_s00009p00143340 I 0.704
GLYMA02G00870 Glycine max GLYMA02G00870 I 0.714
GLYMA03G31940 Glycine max GLYMA03G31940 I 0.710
GLYMA10G00980 Glycine max GLYMA10G00980 I 0.703
GRMZM2G123119 Zea mays GRMZM2G123119 I 0.738
GRMZM2G073258 Zea mays GRMZM2G073258 I 0.757
GLYMA20G34570 Glycine max GLYMA20G34570 I 0.705
GLYMA19G34696 Glycine max GLYMA19G34696 I 0.710
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.683
GLYMA13G18390 Glycine max GLYMA13G18390 I 0.714
GLYMA13G18370 Glycine max GLYMA13G18370 I 0.715
GLYMA13G18350 Glycine max GLYMA13G18350 I 0.714
GLYMA13G18340 Glycine max GLYMA13G18340 I 0.701
GLYMA10G33060 Glycine max GLYMA10G33060 I 0.705
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.683
GLYMA10G04170 Glycine max GLYMA10G04170 I 0.729
AC233933.1_FG001 Zea mays AC233933.1_FG001 I 0.721
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I 0.691
Sb05g026843 Sorghum bicolor Sb05g026843 I 0.821
Sb05g022110 Sorghum bicolor Sb05g022110 I 0.703
Sb02g012630 Sorghum bicolor Sb02g012630 I 0.738
Sb02g005840 Sorghum bicolor Sb02g005840 I 0.714
Sb02g005810 Sorghum bicolor Sb02g005810 I 0.714
Sb01g000352 Sorghum bicolor Sb01g000352 I 0.688
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.705
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I 0.697
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.698
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I 0.695
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I 0.687
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.706
Si027485m.g Setaria italica Si027485m.g I 0.784
Si028088m.g Setaria italica Si028088m.g I 0.757
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I 0.699
TCM_026234 Theobroma cacao TCM_026234 I 0.683
TCM_026233 Theobroma cacao TCM_026233 I 0.678
TCM_020871 Theobroma cacao TCM_020871 I 0.697
TCM_004056 Theobroma cacao TCM_004056 I 0.695
TCM_004052 Theobroma cacao TCM_004052 I 0.693
Si038911m.g Setaria italica Si038911m.g I 0.704
Si033089m.g Setaria italica Si033089m.g I 0.711
Si032815m.g Setaria italica Si032815m.g I 0.712
Si031946m.g Setaria italica Si031946m.g I 0.744
Si028219m.g Setaria italica Si028219m.g I 0.829
Si028135m.g Setaria italica Si028135m.g I 0.829
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I 0.689
OBART07G11330 Oryza barthii OBART07G11330 I 0.712
OPUNC03G03600 Oryza punctata OPUNC03G03600 I 0.678
ONIVA09G20840 Oryza nivara ONIVA09G20840 I 0.738
ONIVA07G09500 Oryza nivara ONIVA07G09500 I 0.724
ONIVA03G03670 Oryza nivara ONIVA03G03670 I 0.681
ONIVA01G50300 Oryza nivara ONIVA01G50300 I 0.712
OLONG_008277 Oryza longistaminata OLONG_008277 I 0.681
OLONG_005597 Oryza longistaminata OLONG_005597 I 0.738
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I 0.738
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I 0.724
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I 0.711
OGLUM03G03790 Oryza glumaepatula OGLUM03G03790 I 0.681
OBART09G20410 Oryza barthii OBART09G20410 I 0.738
OBART07G11340 Oryza barthii OBART07G11340 I 0.724
OPUNC03G38860 Oryza punctata OPUNC03G38860 I 0.700
OPUNC07G10310 Oryza punctata OPUNC07G10310 I 0.724
OS07G0410700 Oryza sativa OS07G0410700 I 0.724
OS03G0150200 Oryza sativa OS03G0150200 I 0.681
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I 0.738
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I 0.724
OS09G0572000 Oryza sativa OS09G0572000 I 0.738
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I 0.712
ORUFI03G03630 Oryza rufipogon ORUFI03G03630 I 0.681
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I 0.724
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I 0.712
ORGLA03G0036700 Oryza glaberrima ORGLA03G0036700 I 0.681
OPUNC09G18690 Oryza punctata OPUNC09G18690 I 0.741
Pavir.Ga02734 Panicum virgatum Pavir.Ga02734 N 0.719
Traes_2AL_9E90C2488 Triticum aestivum Traes_2AL_9E90C2488 N 0.703
Traes_2BL_304012B04 Triticum aestivum Traes_2BL_304012B04 N 0.703
F775_01237 Aegilops tauschii F775_01237 N 0.737
Pavir.Hb01232 Panicum virgatum Pavir.Hb01232 N 0.692
F775_22648 Aegilops tauschii F775_22648 N 0.717
Traes_2BL_3A3353970 Triticum aestivum Traes_2BL_3A3353970 N 0.703