CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ia01229
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Ia01229
T009501_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.718
0.920
EREBP1
M09708_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.702
0.960
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.677
0.880
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ia01229.1.p
AP2
23
74
NQFRGIRRRPWGKWPAEIRDPRKGVRVWLGTFNSSEEAARAYDAEARRIRGK
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gw1.6.206.1
Physcomitrella patens
gw1.6.206.1
N
0.766
GRMZM2G171179
Zea mays
GRMZM2G171179
I
0.730
Sb10g006260
Sorghum bicolor
Sb10g006260
I
0.730
BRADI1G46690
Brachypodium distachyon
BRADI1G46690
I
0.729
MLOC_18529
Hordeum vulgare
MLOC_18529
I
0.720
Si006802m.g
Setaria italica
Si006802m.g
I
0.720
Traes_7DS_3570A0055
Triticum aestivum
Traes_7DS_3570A0055
I
0.720
F775_27248
Aegilops tauschii
F775_27248
I
0.720
TRIUR3_28474
Triticum urartu
TRIUR3_28474
I
0.720
Q2TN80_WHEAT
Triticum aestivum
Q2TN80_WHEAT
D
0.718
ONIVA02G37060
Oryza nivara
ONIVA02G37060
I
0.702
OPUNC02G32270
Oryza punctata
OPUNC02G32270
I
0.702
OMERI06G07210
Oryza meridionalis
OMERI06G07210
I
0.702
OMERI02G32980
Oryza meridionalis
OMERI02G32980
I
0.702
OLONG_013314
Oryza longistaminata
OLONG_013314
I
0.702
OLONG_008836
Oryza longistaminata
OLONG_008836
I
0.702
EREBP1
Oryza sativa
OS02G0782700
D
0.702
OGLUM06G06300
Oryza glumaepatula
OGLUM06G06300
I
0.702
BGIOSGA005480
Oryza indica
BGIOSGA005480
I
0.702
ORUFI06G06250
Oryza rufipogon
ORUFI06G06250
I
0.702
ORUFI02G36450
Oryza rufipogon
ORUFI02G36450
I
0.702
ORGLA02G0302700
Oryza glaberrima
ORGLA02G0302700
I
0.702
OPUNC06G05780
Oryza punctata
OPUNC06G05780
I
0.702
OS06G0194000
Oryza sativa
OS06G0194000
I
0.702
OGLUM02G36100
Oryza glumaepatula
OGLUM02G36100
I
0.702
BGIOSGA022463
Oryza indica
BGIOSGA022463
I
0.702
OB02G41790
Oryza brachyantha
OB02G41790
I
0.702
LPERR06G05580
Leersia perrieri
LPERR06G05580
I
0.702
OB06G15590
Oryza brachyantha
OB06G15590
I
0.702
OBART06G06020
Oryza barthii
OBART06G06020
I
0.702
OBART02G34990
Oryza barthii
OBART02G34990
I
0.702
Solyc06g063070.2
Solanum lycopersicum
Solyc06g063070.2
I
0.700
LPERR02G28780
Leersia perrieri
LPERR02G28780
I
0.700
BRADI3G60120
Brachypodium distachyon
BRADI3G60120
I
0.696
cassava31610.valid.m1
Manihot esculenta
cassava31610.valid.m1
I
0.691
Cucsa.359880
Cucumis sativus
Cucsa.359880
I
0.691
Cla015763
Citrullus lanatus
Cla015763
I
0.691
27585.m000144
Ricinus communis
27585.m000144
I
0.691
cassava31609.valid.m1
Manihot esculenta
cassava31609.valid.m1
I
0.691
Gorai.011G056300
Gossypium raimondii
Gorai.011G056300
I
0.691
MDP0000308922
Malus domestica
MDP0000308922
I
0.691
MDP0000403580
Malus domestica
MDP0000403580
I
0.691
SapurV1A.1700s0030
Salix purpurea
SapurV1A.1700s0030
I
0.691
Lus10037448.g
Linum usitatissimum
Lus10037448.g
I
0.691
Lus10013186.g
Linum usitatissimum
Lus10013186.g
I
0.691
evm.TU.supercontig_481.1
Carica papaya
evm.TU.supercontig_481.1
I
0.691
gene05448-v1.0-hybrid
Fragaria vesca
gene05448-v1.0-hybrid
I
0.691
Ca_16180
Cicer arietinum
Ca_16180
I
0.691
Eucgr.I02155
Eucalyptus grandis
Eucgr.I02155
I
0.691
VIT_09s0002g00470
Vitis vinifera
VIT_09s0002g00470
I
0.691
MTR_2g105380
Medicago truncatula
MTR_2g105380
I
0.691
GSMUA_Achr9G18090_001
Musa acuminata
GSMUA_Achr9G18090_001
I
0.691
GSMUA_Achr3G10140_001
Musa acuminata
GSMUA_Achr3G10140_001
I
0.691
PGSC0003DMG400004898
Solanum tuberosum
PGSC0003DMG400004898
I
0.691
POPTR_0001s16400
Populus trichocarpa
POPTR_0001s16400
I
0.691
GLYMA19G45200
Glycine max
GLYMA19G45200
I
0.691
TCM_029232
Theobroma cacao
TCM_029232
I
0.691
GLYMA03G42450
Glycine max
GLYMA03G42450
I
0.691
Aquca_020_00575
Aquilegia coerulea
Aquca_020_00575
I
0.685
GSMUA_Achr6G10870_001
Musa acuminata
GSMUA_Achr6G10870_001
I
0.685
MTR_8g022820
Medicago truncatula
MTR_8g022820
I
0.685
PK15234.1
Cannabis sativa
PK15234.1
I
0.685
POPTR_0003s06930
Populus trichocarpa
POPTR_0003s06930
I
0.684
PRUPE_ppa006366mg
Prunus persica
PRUPE_ppa006366mg
I
0.684
Pm013172
Prunus mume
Pm013172
I
0.684
GSMUA_Achr3G05800_001
Musa acuminata
GSMUA_Achr3G05800_001
I
0.683
SapurV1A.1115s0040
Salix purpurea
SapurV1A.1115s0040
I
0.682
GSMUA_Achr8G23730_001
Musa acuminata
GSMUA_Achr8G23730_001
I
0.682
Gorai.009G147300
Gossypium raimondii
Gorai.009G147300
I
0.682
Cla012751
Citrullus lanatus
Cla012751
I
0.682
GRMZM2G052667
Zea mays
GRMZM2G052667
I
0.681
Q7Y1W2_TOBAC
Nicotiana tabacum
Q7Y1W2_TOBAC
D
0.677
Cucsa.149280
Cucumis sativus
Cucsa.149280
I
0.677