Pavir.Ia01229 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ia01229 T009501_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.718 0.920
EREBP1
M09708_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.702 0.960
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.677 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia01229.1.p AP2 23 74

Links

Other AP2 family TFs
Other Panicum virgatum TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27585.m000144 Ricinus communis 27585.m000144 I 0.691
Aquca_020_00575 Aquilegia coerulea Aquca_020_00575 I 0.685
BGIOSGA005480 Oryza indica BGIOSGA005480 I 0.702
BGIOSGA022463 Oryza indica BGIOSGA022463 I 0.702
BRADI1G46690 Brachypodium distachyon BRADI1G46690 I 0.729
BRADI3G60120 Brachypodium distachyon BRADI3G60120 I 0.696
cassava31609.valid.m1 Manihot esculenta cassava31609.valid.m1 I 0.691
cassava31610.valid.m1 Manihot esculenta cassava31610.valid.m1 I 0.691
Ca_16180 Cicer arietinum Ca_16180 I 0.691
Cla012751 Citrullus lanatus Cla012751 I 0.682
Cla015763 Citrullus lanatus Cla015763 I 0.691
Cucsa.149280 Cucumis sativus Cucsa.149280 I 0.677
Cucsa.359880 Cucumis sativus Cucsa.359880 I 0.691
EREBP1 Oryza sativa OS02G0782700 D 0.702
Eucgr.I02155 Eucalyptus grandis Eucgr.I02155 I 0.691
evm.TU.supercontig_481.1 Carica papaya evm.TU.supercontig_481.1 I 0.691
F775_27248 Aegilops tauschii F775_27248 I 0.720
gene05448-v1.0-hybrid Fragaria vesca gene05448-v1.0-hybrid I 0.691
GLYMA03G42450 Glycine max GLYMA03G42450 I 0.691
GLYMA19G45200 Glycine max GLYMA19G45200 I 0.691
Gorai.009G147300 Gossypium raimondii Gorai.009G147300 I 0.682
Gorai.011G056300 Gossypium raimondii Gorai.011G056300 I 0.691
GRMZM2G052667 Zea mays GRMZM2G052667 I 0.681
GRMZM2G171179 Zea mays GRMZM2G171179 I 0.730
GSMUA_Achr3G05800_001 Musa acuminata GSMUA_Achr3G05800_001 I 0.683
GSMUA_Achr3G10140_001 Musa acuminata GSMUA_Achr3G10140_001 I 0.691
GSMUA_Achr6G10870_001 Musa acuminata GSMUA_Achr6G10870_001 I 0.685
GSMUA_Achr8G23730_001 Musa acuminata GSMUA_Achr8G23730_001 I 0.682
GSMUA_Achr9G18090_001 Musa acuminata GSMUA_Achr9G18090_001 I 0.691
gw1.6.206.1 Physcomitrella patens gw1.6.206.1 N 0.766
LPERR02G28780 Leersia perrieri LPERR02G28780 I 0.700
LPERR06G05580 Leersia perrieri LPERR06G05580 I 0.702
Lus10013186.g Linum usitatissimum Lus10013186.g I 0.691
Lus10037448.g Linum usitatissimum Lus10037448.g I 0.691
MDP0000308922 Malus domestica MDP0000308922 I 0.691
MDP0000403580 Malus domestica MDP0000403580 I 0.691
MLOC_18529 Hordeum vulgare MLOC_18529 I 0.720
MTR_2g105380 Medicago truncatula MTR_2g105380 I 0.691
MTR_8g022820 Medicago truncatula MTR_8g022820 I 0.685
OB02G41790 Oryza brachyantha OB02G41790 I 0.702
OB06G15590 Oryza brachyantha OB06G15590 I 0.702
OBART02G34990 Oryza barthii OBART02G34990 I 0.702
OBART06G06020 Oryza barthii OBART06G06020 I 0.702
OGLUM02G36100 Oryza glumaepatula OGLUM02G36100 I 0.702
OGLUM06G06300 Oryza glumaepatula OGLUM06G06300 I 0.702
OLONG_008836 Oryza longistaminata OLONG_008836 I 0.702
OLONG_013314 Oryza longistaminata OLONG_013314 I 0.702
OMERI02G32980 Oryza meridionalis OMERI02G32980 I 0.702
OMERI06G07210 Oryza meridionalis OMERI06G07210 I 0.702
ONIVA02G37060 Oryza nivara ONIVA02G37060 I 0.702
OPUNC02G32270 Oryza punctata OPUNC02G32270 I 0.702
OPUNC06G05780 Oryza punctata OPUNC06G05780 I 0.702
ORGLA02G0302700 Oryza glaberrima ORGLA02G0302700 I 0.702
ORUFI02G36450 Oryza rufipogon ORUFI02G36450 I 0.702
ORUFI06G06250 Oryza rufipogon ORUFI06G06250 I 0.702
OS06G0194000 Oryza sativa OS06G0194000 I 0.702
PGSC0003DMG400004898 Solanum tuberosum PGSC0003DMG400004898 I 0.691
PK15234.1 Cannabis sativa PK15234.1 I 0.685
Pm013172 Prunus mume Pm013172 I 0.684
POPTR_0001s16400 Populus trichocarpa POPTR_0001s16400 I 0.691
POPTR_0003s06930 Populus trichocarpa POPTR_0003s06930 I 0.684
PRUPE_ppa006366mg Prunus persica PRUPE_ppa006366mg I 0.684
Q2TN80_WHEAT Triticum aestivum Q2TN80_WHEAT D 0.718
Q7Y1W2_TOBAC Nicotiana tabacum Q7Y1W2_TOBAC D 0.677
SapurV1A.1115s0040 Salix purpurea SapurV1A.1115s0040 I 0.682
SapurV1A.1700s0030 Salix purpurea SapurV1A.1700s0030 I 0.691
Sb10g006260 Sorghum bicolor Sb10g006260 I 0.730
Si006802m.g Setaria italica Si006802m.g I 0.720
Solyc06g063070.2 Solanum lycopersicum Solyc06g063070.2 I 0.700
TCM_029232 Theobroma cacao TCM_029232 I 0.691
Traes_7DS_3570A0055 Triticum aestivum Traes_7DS_3570A0055 I 0.720
TRIUR3_28474 Triticum urartu TRIUR3_28474 I 0.720
VIT_09s0002g00470 Vitis vinifera VIT_09s0002g00470 I 0.691