Pavir.Ia04256 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ia04256 T009513_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.733 0.740
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.711 0.700
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.711 0.700
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.711 0.700
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.710 0.720
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.685 0.700
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04256.1.p AP2 99 150

Links

Other AP2 family TFs
Other Panicum virgatum TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si022788m.g Setaria italica Si022788m.g I 0.790
GRMZM2G105266 Zea mays GRMZM2G105266 I 0.776
MLOC_40486 Hordeum vulgare MLOC_40486 I 0.756
BRADI2G31480 Brachypodium distachyon BRADI2G31480 I 0.754
GSMUA_Achr11G19880_001 Musa acuminata GSMUA_Achr11G19880_001 I 0.748
GSMUA_Achr7G21980_001 Musa acuminata GSMUA_Achr7G21980_001 I 0.744
TCM_042300 Theobroma cacao TCM_042300 I 0.736
Bo9g111050 Brassica oleracea Bo9g111050 I 0.734
Bra003068 Brassica rapa Bra003068 I 0.734
orange1.1g043400m.g Citrus sinensis orange1.1g043400m.g I 0.734
Pavir.Bb02294 Panicum virgatum Pavir.Bb02294 I 0.734
Bra022643 Brassica rapa Bra022643 I 0.734
Thhalv10013898m.g Eutrema salsugineum Thhalv10013898m.g I 0.734
Ciclev10002183m.g Citrus clementina Ciclev10002183m.g I 0.734
Bo2g045930 Brassica oleracea Bo2g045930 I 0.734
SapurV1A.1111s0070 Salix purpurea SapurV1A.1111s0070 I 0.733
CRF3 Arabidopsis lyrata scaffold_801806.1 I 0.733
CRF3 Arabidopsis thaliana AT5G53290 D 0.733
Carubv10026682m.g Capsella rubella Carubv10026682m.g I 0.733
LPERR03G32900 Leersia perrieri LPERR03G32900 I 0.733
Bostr.26833s0952 Boechera stricta Bostr.26833s0952 I 0.733
Cagra.0084s0074 Capsella grandiflora Cagra.0084s0074 I 0.733
evm.TU.supercontig_2.277 Carica papaya evm.TU.supercontig_2.277 I 0.731
28641.m000082 Ricinus communis 28641.m000082 I 0.728
cassava27467.m1 Manihot esculenta cassava27467.m1 I 0.728
Bo8g053000 Brassica oleracea Bo8g053000 I 0.727
Pm013049 Prunus mume Pm013049 I 0.727
Bo1g051080 Brassica oleracea Bo1g051080 I 0.727
Bra026295 Brassica rapa Bra026295 I 0.727
Bra010389 Brassica rapa Bra010389 I 0.727
GSMUA_Achr5G27850_001 Musa acuminata GSMUA_Achr5G27850_001 I 0.726
GLYMA06G13040 Glycine max GLYMA06G13040 I 0.725
GLYMA04G41740 Glycine max GLYMA04G41740 I 0.725
MDP0000854039 Malus domestica MDP0000854039 I 0.725
POPTR_0015s06070 Populus trichocarpa POPTR_0015s06070 I 0.725
SapurV1A.1017s0070 Salix purpurea SapurV1A.1017s0070 I 0.725
GLYMA01G43350 Glycine max GLYMA01G43350 I 0.725
MDP0000308379 Malus domestica MDP0000308379 I 0.725
Eucgr.A02669 Eucalyptus grandis Eucgr.A02669 I 0.724
gene13118-v1.0-hybrid Fragaria vesca gene13118-v1.0-hybrid I 0.721
GLYMA02G40320 Glycine max GLYMA02G40320 I 0.721
SapurV1A.1043s0120 Salix purpurea SapurV1A.1043s0120 I 0.719
Gorai.006G200400 Gossypium raimondii Gorai.006G200400 I 0.719
Solyc03g007460.1 Solanum lycopersicum Solyc03g007460.1 I 0.719
cassava7228.valid.m1 Manihot esculenta cassava7228.valid.m1 I 0.719
SapurV1A.1442s0010 Salix purpurea SapurV1A.1442s0010 I 0.719
Solyc06g051840.1 Solanum lycopersicum Solyc06g051840.1 I 0.719
30169.m006542 Ricinus communis 30169.m006542 I 0.719
SapurV1A.2151s0020 Salix purpurea SapurV1A.2151s0020 I 0.719
Eucgr.K00321 Eucalyptus grandis Eucgr.K00321 I 0.719
cassava32471.m1 Manihot esculenta cassava32471.m1 I 0.719
Gorai.008G271200 Gossypium raimondii Gorai.008G271200 I 0.719
PGSC0003DMG400002350 Solanum tuberosum PGSC0003DMG400002350 I 0.719
Aquca_037_00045 Aquilegia coerulea Aquca_037_00045 I 0.719
VIT_16s0050g02400 Vitis vinifera VIT_16s0050g02400 I 0.719
TCM_015336 Theobroma cacao TCM_015336 I 0.719
POPTR_0012s01260 Populus trichocarpa POPTR_0012s01260 I 0.719
PGSC0003DMG400036493 Solanum tuberosum PGSC0003DMG400036493 I 0.719
Bostr.7867s0626 Boechera stricta Bostr.7867s0626 I 0.719
mgf018116m Mimulus guttatus mgf018116m I 0.718
Carubv10001539m.g Capsella rubella Carubv10001539m.g I 0.718
CRF1 Arabidopsis thaliana AT4G11140 I 0.718
GLYMA11G02140 Glycine max GLYMA11G02140 I 0.718
Ciclev10005220m.g Citrus clementina Ciclev10005220m.g I 0.718
PK28823.1 Cannabis sativa PK28823.1 I 0.718
MDP0000190504 Malus domestica MDP0000190504 I 0.718
GLYMA08G02460 Glycine max GLYMA08G02460 I 0.718
CRF1 Arabidopsis lyrata fgenesh2_kg.6__3086__AT4G11140.1 I 0.718
orange1.1g047455m.g Citrus sinensis orange1.1g047455m.g I 0.718
ONIVA03G40360 Oryza nivara ONIVA03G40360 I 0.717
Bo3g022760 Brassica oleracea Bo3g022760 I 0.717
ORUFI03G40350 Oryza rufipogon ORUFI03G40350 I 0.717
ORGLA03G0354400 Oryza glaberrima ORGLA03G0354400 I 0.717
OMERI03G35630 Oryza meridionalis OMERI03G35630 I 0.717
SapurV1A.0215s0310 Salix purpurea SapurV1A.0215s0310 I 0.717
VIT_06s0004g08190 Vitis vinifera VIT_06s0004g08190 I 0.717
OS03G0815800 Oryza sativa OS03G0815800 I 0.717
Bra029079 Brassica rapa Bra029079 I 0.717
OBART03G38710 Oryza barthii OBART03G38710 I 0.717
Thhalv10025693m.g Eutrema salsugineum Thhalv10025693m.g I 0.717
BGIOSGA009571 Oryza indica BGIOSGA009571 I 0.717
OGLUM03G38530 Oryza glumaepatula OGLUM03G38530 I 0.717
SapurV1A.4828s0010 Salix purpurea SapurV1A.4828s0010 I 0.717
Thhalv10029132m.g Eutrema salsugineum Thhalv10029132m.g I 0.716
Cagra.16778s0005 Capsella grandiflora Cagra.16778s0005 I 0.716
Bo3g045150 Brassica oleracea Bo3g045150 I 0.716
Bostr.25463s0212 Boechera stricta Bostr.25463s0212 I 0.716
AMTR_s00097p00165740 Amborella trichopoda AMTR_s00097p00165740 I 0.715
Cla004291 Citrullus lanatus Cla004291 I 0.715
Cucsa.012850 Cucumis sativus Cucsa.012850 I 0.715
PRUPE_ppa025495mg Prunus persica PRUPE_ppa025495mg I 0.714
PRUPE_ppa022995mg Prunus persica PRUPE_ppa022995mg I 0.714
Pm000232 Prunus mume Pm000232 I 0.714
OPUNC03G35790 Oryza punctata OPUNC03G35790 I 0.714
Cucsa.201950 Cucumis sativus Cucsa.201950 I 0.714
CRF4 Arabidopsis lyrata scaffold_701473.1 I 0.713
Bra004548 Brassica rapa Bra004548 I 0.712
Gorai.009G355700 Gossypium raimondii Gorai.009G355700 I 0.712
TCM_032408 Theobroma cacao TCM_032408 I 0.712
POPTR_0019s15190 Populus trichocarpa POPTR_0019s15190 I 0.712
CRF4 Arabidopsis thaliana AT4G27950 D 0.711
Carubv10005229m.g Capsella rubella Carubv10005229m.g I 0.711
Pavir.Ia00165 Panicum virgatum Pavir.Ia00165 I 0.711
Cagra.1225s0103 Capsella grandiflora Cagra.1225s0103 I 0.711
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.711
TCM_005203 Theobroma cacao TCM_005203 I 0.710
Gorai.008G123400 Gossypium raimondii Gorai.008G123400 I 0.710
Bo4g009400 Brassica oleracea Bo4g009400 I 0.710
CRF2 Arabidopsis thaliana AT4G23750 D 0.710
mgf019903m Mimulus guttatus mgf019903m I 0.710
PRUPE_ppa008720mg Prunus persica PRUPE_ppa008720mg I 0.707
GLYMA03G23330 Glycine max GLYMA03G23330 I 0.707
Lus10039324.g Linum usitatissimum Lus10039324.g I 0.707
Lus10027573.g Linum usitatissimum Lus10027573.g I 0.707
Pm019793 Prunus mume Pm019793 I 0.707
Ca_03948 Cicer arietinum Ca_03948 I 0.706
Cla004992 Citrullus lanatus Cla004992 I 0.706
MTR_3g090760 Medicago truncatula MTR_3g090760 I 0.706
Pavir.J00119 Panicum virgatum Pavir.J00119 I 0.705
Ca_15671 Cicer arietinum Ca_15671 I 0.704
Gorai.001G156900 Gossypium raimondii Gorai.001G156900 I 0.704
Ca_13084 Cicer arietinum Ca_13084 I 0.703
Cla013632 Citrullus lanatus Cla013632 I 0.701
Sb05g001280 Sorghum bicolor Sb05g001280 I 0.701
e_gw1.357.22.1 Physcomitrella patens e_gw1.357.22.1 I 0.701
GSMUA_Achr4G16600_001 Musa acuminata GSMUA_Achr4G16600_001 I 0.701
Cucsa.107190 Cucumis sativus Cucsa.107190 I 0.700
GRMZM2G171569 Zea mays GRMZM2G171569 I 0.700
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.700
Cucsa.364910 Cucumis sativus Cucsa.364910 I 0.700
Cla002067 Citrullus lanatus Cla002067 I 0.700
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.700
Cla011108 Citrullus lanatus Cla011108 I 0.700
Bostr.7867s0178 Boechera stricta Bostr.7867s0178 I 0.699
CRF2 Arabidopsis lyrata fgenesh2_kg.7__1924__AT4G23750.1 I 0.699
Carubv10005160m.g Capsella rubella Carubv10005160m.g I 0.699
Cagra.1226s0039 Capsella grandiflora Cagra.1226s0039 I 0.699
mgf023807m Mimulus guttatus mgf023807m I 0.698
GLYMA19G44240 Glycine max GLYMA19G44240 I 0.698
Pavir.J11205 Panicum virgatum Pavir.J11205 I 0.697
mgf022434m Mimulus guttatus mgf022434m I 0.697
Cucsa.258900 Cucumis sativus Cucsa.258900 I 0.695
Cla021505 Citrullus lanatus Cla021505 I 0.695
Pavir.J29117 Panicum virgatum Pavir.J29117 I 0.694
Aquca_013_00162 Aquilegia coerulea Aquca_013_00162 I 0.694
Pavir.J24236 Panicum virgatum Pavir.J24236 I 0.694
SapurV1A.0013s0740 Salix purpurea SapurV1A.0013s0740 I 0.693
chr2.CM0060.150.nc Lotus japonicus chr2.CM0060.150.nc I 0.692
Si008428m.g Setaria italica Si008428m.g I 0.691
GLYMA03G41640 Glycine max GLYMA03G41640 I 0.690
Bo1g017580 Brassica oleracea Bo1g017580 I 0.690
Gorai.006G208200 Gossypium raimondii Gorai.006G208200 I 0.690
MDP0000229285 Malus domestica MDP0000229285 I 0.689
Solyc06g082590.1 Solanum lycopersicum Solyc06g082590.1 I 0.689
GLYMA05G37120 Glycine max GLYMA05G37120 I 0.689
SapurV1A.0237s0040 Salix purpurea SapurV1A.0237s0040 I 0.689
MDP0000783818 Malus domestica MDP0000783818 I 0.689
GRMZM2G060465 Zea mays GRMZM2G060465 I 0.689
POPTR_0014s09020 Populus trichocarpa POPTR_0014s09020 I 0.689
TRIUR3_07811 Triticum urartu TRIUR3_07811 I 0.689
POPTR_0003s13610 Populus trichocarpa POPTR_0003s13610 I 0.689
CRF5 Arabidopsis lyrata fgenesh2_kg.4__2841__AT2G46310.1 I 0.689
Bra040839 Brassica rapa Bra040839 I 0.688
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I 0.688
30190.m010791 Ricinus communis 30190.m010791 I 0.688
Bra040158 Brassica rapa Bra040158 I 0.688
Lus10005281.g Linum usitatissimum Lus10005281.g I 0.687
GSMUA_Achr8G06870_001 Musa acuminata GSMUA_Achr8G06870_001 I 0.687
Lus10013958.g Linum usitatissimum Lus10013958.g I 0.687
evm.TU.supercontig_122.27 Carica papaya evm.TU.supercontig_122.27 I 0.687
PGSC0003DMG400030472 Solanum tuberosum PGSC0003DMG400030472 I 0.687
orange1.1g036154m.g Citrus sinensis orange1.1g036154m.g I 0.686
Gorai.008G252300 Gossypium raimondii Gorai.008G252300 I 0.686
Cla011573 Citrullus lanatus Cla011573 I 0.686
Bo7g111760 Brassica oleracea Bo7g111760 I 0.686
POPTR_0001s10300 Populus trichocarpa POPTR_0001s10300 I 0.686
TCM_016396 Theobroma cacao TCM_016396 I 0.686
Gorai.004G135700 Gossypium raimondii Gorai.004G135700 I 0.686
Ciclev10021073m.g Citrus clementina Ciclev10021073m.g I 0.686
cassava12291.valid.m1 Manihot esculenta cassava12291.valid.m1 I 0.686
PK16787.1 Cannabis sativa PK16787.1 I 0.686
Pavir.J26710 Panicum virgatum Pavir.J26710 I 0.686
Cagra.0050s0068 Capsella grandiflora Cagra.0050s0068 I 0.686
POPTR_0008s19030 Populus trichocarpa POPTR_0008s19030 I 0.686
SapurV1A.0069s0280 Salix purpurea SapurV1A.0069s0280 I 0.686
POPTR_0002s16900 Populus trichocarpa POPTR_0002s16900 I 0.686
Cucsa.303720 Cucumis sativus Cucsa.303720 I 0.686
cassava39307.m1 Manihot esculenta cassava39307.m1 I 0.686
PRUPE_ppa025804mg Prunus persica PRUPE_ppa025804mg I 0.686
Bostr.25993s0138 Boechera stricta Bostr.25993s0138 I 0.686
Carubv10023769m.g Capsella rubella Carubv10023769m.g I 0.686
Pm024096 Prunus mume Pm024096 I 0.686
F775_13439 Aegilops tauschii F775_13439 I 0.686
Sb01g003670 Sorghum bicolor Sb01g003670 I 0.685
SapurV1A.0099s0060 Salix purpurea SapurV1A.0099s0060 I 0.685
mgf021650m Mimulus guttatus mgf021650m I 0.685
Eucgr.D01775 Eucalyptus grandis Eucgr.D01775 I 0.685
O65242_TOBAC Nicotiana tabacum O65242_TOBAC D 0.685
Ciclev10021422m.g Citrus clementina Ciclev10021422m.g I 0.684
orange1.1g022553m.g Citrus sinensis orange1.1g022553m.g I 0.684
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.684
GSMUA_Achr3G23710_001 Musa acuminata GSMUA_Achr3G23710_001 I 0.684
GSMUA_Achr7G00350_001 Musa acuminata GSMUA_Achr7G00350_001 I 0.684
Lus10032353.g Linum usitatissimum Lus10032353.g I 0.683
Lus10033938.g Linum usitatissimum Lus10033938.g I 0.683
28049.m000300 Ricinus communis 28049.m000300 I 0.683
GSMUA_Achr8G01690_001 Musa acuminata GSMUA_Achr8G01690_001 I 0.683
MTR_1g028560 Medicago truncatula MTR_1g028560 I 0.683
TRAES3BF051200070CFD_g Triticum aestivum TRAES3BF051200070CFD_g I 0.682
CRF5 Arabidopsis thaliana AT2G46310 I 0.682
evm.TU.supercontig_3.43 Carica papaya evm.TU.supercontig_3.43 I 0.682
GSMUA_Achr10G14570_001 Musa acuminata GSMUA_Achr10G14570_001 I 0.682
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I 0.681
BRADI2G45530 Brachypodium distachyon BRADI2G45530 I 0.681
MLOC_10225 Hordeum vulgare MLOC_10225 I 0.681
Lus10017550.g Linum usitatissimum Lus10017550.g I 0.681
PGSC0003DMG400012305 Solanum tuberosum PGSC0003DMG400012305 I 0.681
Lus10027469.g Linum usitatissimum Lus10027469.g I 0.681
Solyc08g081960.1 Solanum lycopersicum Solyc08g081960.1 I 0.681
OMERI01G22970 Oryza meridionalis OMERI01G22970 I 0.680
OLONG_003671 Oryza longistaminata OLONG_003671 I 0.680
ONIVA01G28490 Oryza nivara ONIVA01G28490 I 0.680
OS01G0657400 Oryza sativa OS01G0657400 I 0.680
OGLUM01G29010 Oryza glumaepatula OGLUM01G29010 I 0.680
ORUFI01G28060 Oryza rufipogon ORUFI01G28060 I 0.680
ORGLA01G0205500 Oryza glaberrima ORGLA01G0205500 I 0.680
OB01G34420 Oryza brachyantha OB01G34420 I 0.680
Bo8g049450 Brassica oleracea Bo8g049450 I 0.680
OBART01G25240 Oryza barthii OBART01G25240 I 0.680
BGIOSGA001090 Oryza indica BGIOSGA001090 I 0.680
GRMZM2G160971 Zea mays GRMZM2G160971 I 0.679
Lus10003562.g Linum usitatissimum Lus10003562.g I 0.679
Lus10033885.g Linum usitatissimum Lus10033885.g I 0.679
evm.TU.supercontig_55.155 Carica papaya evm.TU.supercontig_55.155 I 0.679
MDP0000279943 Malus domestica MDP0000279943 I 0.679
evm.TU.supercontig_194.13 Carica papaya evm.TU.supercontig_194.13 I 0.679
LPERR01G21530 Leersia perrieri LPERR01G21530 I 0.678
mgf008137m Mimulus guttatus mgf008137m I 0.678
Eucgr.E02652 Eucalyptus grandis Eucgr.E02652 I 0.677
Ciclev10018130m.g Citrus clementina Ciclev10018130m.g I 0.677
Eucgr.E03167 Eucalyptus grandis Eucgr.E03167 I 0.677
Cucsa.118840 Cucumis sativus Cucsa.118840 I 0.677
cassava3045.m1 Manihot esculenta cassava3045.m1 I 0.677
TCM_029772 Theobroma cacao TCM_029772 I 0.677
GSMUA_Achr8G08000_001 Musa acuminata GSMUA_Achr8G08000_001 I 0.677
evm.TU.supercontig_7.36 Carica papaya evm.TU.supercontig_7.36 I 0.677
GLYMA16G08683 Glycine max GLYMA16G08683 I 0.677
orange1.1g037347m.g Citrus sinensis orange1.1g037347m.g I 0.677
GRMZM2G009598 Zea mays GRMZM2G009598 I 0.677
GSMUA_Achr6G32030_001 Musa acuminata GSMUA_Achr6G32030_001 I 0.677
Pavir.Da00220 Panicum virgatum Pavir.Da00220 I 0.677