Pavir.Ib02796 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ib02796 T009531_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.712 0.776
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.712 0.776
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.687 0.796
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.687 0.776
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.680 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib02796.1.p AP2 107 158

Links

Other AP2 family TFs
Other Panicum virgatum TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA10G0072500 Oryza glaberrima ORGLA10G0072500 I 0.766
OMERI10G05820 Oryza meridionalis OMERI10G05820 I 0.766
BGIOSGA032849 Oryza indica BGIOSGA032849 I 0.766
OGLUM10G08400 Oryza glumaepatula OGLUM10G08400 I 0.766
ORUFI10G09060 Oryza rufipogon ORUFI10G09060 I 0.766
OS10G0390800 Oryza sativa OS10G0390800 I 0.766
ONIVA10G08250 Oryza nivara ONIVA10G08250 I 0.766
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I 0.754
GRMZM2G169382 Zea mays GRMZM2G169382 I 0.754
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I 0.754
GRMZM2G053503 Zea mays GRMZM2G053503 I 0.754
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I 0.754
Sb03g012890 Sorghum bicolor Sb03g012890 I 0.754
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I 0.754
OS01G0313300 Oryza sativa OS01G0313300 I 0.754
Si002845m.g Setaria italica Si002845m.g I 0.754
Pavir.J08480 Panicum virgatum Pavir.J08480 I 0.754
OPUNC01G12900 Oryza punctata OPUNC01G12900 I 0.754
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I 0.754
OMERI12G11270 Oryza meridionalis OMERI12G11270 I 0.754
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I 0.754
BGIOSGA003364 Oryza indica BGIOSGA003364 I 0.754
Ciclev10025816m.g Citrus clementina Ciclev10025816m.g I 0.714
cassava42231.valid.m1 Manihot esculenta cassava42231.valid.m1 I 0.714
orange1.1g020391m.g Citrus sinensis orange1.1g020391m.g I 0.714
cassava42230.valid.m1 Manihot esculenta cassava42230.valid.m1 I 0.714
GRMZM2G018984 Zea mays GRMZM2G018984 I 0.713
GRMZM2G125460 Zea mays GRMZM2G125460 N 0.712
Carubv10009538m.g Capsella rubella Carubv10009538m.g I 0.712
Cagra.0769s0008 Capsella grandiflora Cagra.0769s0008 I 0.712
RAP2-12 Arabidopsis thaliana AT1G53910 D 0.712
mgf009667m Mimulus guttatus mgf009667m I 0.712
Bostr.7128s0090 Boechera stricta Bostr.7128s0090 I 0.712
RAP2.12 Arabidopsis lyrata scaffold_105235.1 I 0.712
mgf010035m Mimulus guttatus mgf010035m I 0.712
Thhalv10011606m.g Eutrema salsugineum Thhalv10011606m.g I 0.712
GLYMA15G16260 Glycine max GLYMA15G16260 I 0.709
Traes_5AL_14D9A9844 Triticum aestivum Traes_5AL_14D9A9844 I 0.708
MLOC_38561 Hordeum vulgare MLOC_38561 I 0.708
Traes_5BL_7F84602F3 Triticum aestivum Traes_5BL_7F84602F3 I 0.708
F775_30714 Aegilops tauschii F775_30714 I 0.708
Traes_5DL_26F3B188A Triticum aestivum Traes_5DL_26F3B188A I 0.708
TRIUR3_20682 Triticum urartu TRIUR3_20682 I 0.708
PDK_20s1440861g004 Phoenix dactylifera PDK_20s1440861g004 I 0.708
Bo3g184310 Brassica oleracea Bo3g184310 I 0.707
chr1.CM0442.200.nd Lotus japonicus chr1.CM0442.200.nd I 0.707
LjT01F24.60.nd Lotus japonicus LjT01F24.60.nd I 0.707
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I 0.706
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I 0.706
OBART09G11390 Oryza barthii OBART09G11390 I 0.705
OB09G17960 Oryza brachyantha OB09G17960 I 0.705
ONIVA09G11170 Oryza nivara ONIVA09G11170 I 0.705
OGLUM09G11780 Oryza glumaepatula OGLUM09G11780 I 0.705
OLONG_007389 Oryza longistaminata OLONG_007389 I 0.705
OS09G0434500 Oryza sativa OS09G0434500 I 0.705
OMERI09G08870 Oryza meridionalis OMERI09G08870 I 0.705
LPERR09G08060 Leersia perrieri LPERR09G08060 I 0.705
ORUFI09G12180 Oryza rufipogon ORUFI09G12180 I 0.705
OPUNC09G09870 Oryza punctata OPUNC09G09870 I 0.705
Sb02g025530 Sorghum bicolor Sb02g025530 I 0.705
Pavir.J01991 Panicum virgatum Pavir.J01991 I 0.705
BRADI4G31040 Brachypodium distachyon BRADI4G31040 I 0.705
Pavir.Bb02257 Panicum virgatum Pavir.Bb02257 I 0.705
BGIOSGA030816 Oryza indica BGIOSGA030816 I 0.705
Si030088m.g Setaria italica Si030088m.g I 0.705
ORGLA09G0085500 Oryza glaberrima ORGLA09G0085500 I 0.705
fgenesh1_pm.chr_4_#_35 Ostreococcus RCC809 fgenesh1_pm.chr_4_#_35 I 0.702
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I 0.702
OSTLU_9237 Ostreococcus lucimarinus OSTLU_9237 I 0.702
estExt_fgenesh1_pg.C_Chr_04.00010339 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_04.00010339 I 0.702
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I 0.702
GSMUA_AchrUn_randomG19380_001 Musa acuminata GSMUA_AchrUn_randomG19380_001 I 0.701
Si017568m.g Setaria italica Si017568m.g I 0.700
GRMZM2G018398 Zea mays GRMZM2G018398 I 0.700
Pavir.J04875 Panicum virgatum Pavir.J04875 I 0.700
GSMUA_Achr2G07300_001 Musa acuminata GSMUA_Achr2G07300_001 I 0.700
Pavir.Aa00281 Panicum virgatum Pavir.Aa00281 I 0.700
ONIVA06G06990 Oryza nivara ONIVA06G06990 I 0.700
GLYMA07G04950 Glycine max GLYMA07G04950 I 0.698
GLYMA16G01500 Glycine max GLYMA16G01500 I 0.698
Si036615m.g Setaria italica Si036615m.g I 0.698
Cucsa.101370 Cucumis sativus Cucsa.101370 I 0.697
GSMUA_Achr10G19950_001 Musa acuminata GSMUA_Achr10G19950_001 I 0.697
Aquca_023_00168 Aquilegia coerulea Aquca_023_00168 I 0.697
mgf005222m Mimulus guttatus mgf005222m I 0.697
AMTR_s00017p00232330 Amborella trichopoda AMTR_s00017p00232330 I 0.696
PK15234.1 Cannabis sativa PK15234.1 I 0.696
BGIOSGA011328 Oryza indica BGIOSGA011328 I 0.695
ONIVA03G06080 Oryza nivara ONIVA03G06080 I 0.695
AC206951.3_FG017 Zea mays AC206951.3_FG017 I 0.695
ORGLA03G0058500 Oryza glaberrima ORGLA03G0058500 I 0.695
OMERI03G05890 Oryza meridionalis OMERI03G05890 I 0.695
OBART03G06060 Oryza barthii OBART03G06060 I 0.695
Pavir.Ib00526 Panicum virgatum Pavir.Ib00526 I 0.695
LPERR03G05400 Leersia perrieri LPERR03G05400 I 0.695
OS03G0183000 Oryza sativa OS03G0183000 I 0.695
Pavir.J26885 Panicum virgatum Pavir.J26885 I 0.695
OGLUM03G06060 Oryza glumaepatula OGLUM03G06060 I 0.695
Pavir.J34139 Panicum virgatum Pavir.J34139 I 0.695
ORUFI03G05890 Oryza rufipogon ORUFI03G05890 I 0.695
POPTR_0001s16400 Populus trichocarpa POPTR_0001s16400 I 0.694
TCM_029232 Theobroma cacao TCM_029232 I 0.694
PRUPE_ppa006366mg Prunus persica PRUPE_ppa006366mg I 0.694
POPTR_0003s06930 Populus trichocarpa POPTR_0003s06930 I 0.694
TRIUR3_28710 Triticum urartu TRIUR3_28710 I 0.694
Traes_4AS_094442636 Triticum aestivum Traes_4AS_094442636 I 0.694
MTR_2g105380 Medicago truncatula MTR_2g105380 I 0.694
GSMUA_Achr9G18090_001 Musa acuminata GSMUA_Achr9G18090_001 I 0.694
gene05448-v1.0-hybrid Fragaria vesca gene05448-v1.0-hybrid I 0.694
VIT_09s0002g00470 Vitis vinifera VIT_09s0002g00470 I 0.694
GLYMA03G42450 Glycine max GLYMA03G42450 I 0.694
evm.TU.supercontig_481.1 Carica papaya evm.TU.supercontig_481.1 I 0.694
MDP0000403580 Malus domestica MDP0000403580 I 0.694
GSMUA_Achr3G10140_001 Musa acuminata GSMUA_Achr3G10140_001 I 0.694
Lus10037448.g Linum usitatissimum Lus10037448.g I 0.694
MDP0000308922 Malus domestica MDP0000308922 I 0.694
Lus10013186.g Linum usitatissimum Lus10013186.g I 0.694
Gorai.011G056300 Gossypium raimondii Gorai.011G056300 I 0.694
Gorai.009G147300 Gossypium raimondii Gorai.009G147300 I 0.694
GLYMA19G45200 Glycine max GLYMA19G45200 I 0.694
Eucgr.I02155 Eucalyptus grandis Eucgr.I02155 I 0.694
Pm013172 Prunus mume Pm013172 I 0.694
27585.m000144 Ricinus communis 27585.m000144 I 0.694
Cla015763 Citrullus lanatus Cla015763 I 0.694
Cla008608 Citrullus lanatus Cla008608 I 0.694
Ca_16180 Cicer arietinum Ca_16180 I 0.694
cassava31609.valid.m1 Manihot esculenta cassava31609.valid.m1 I 0.694
cassava31610.valid.m1 Manihot esculenta cassava31610.valid.m1 I 0.694
SapurV1A.1700s0030 Salix purpurea SapurV1A.1700s0030 I 0.694
Cucsa.359880 Cucumis sativus Cucsa.359880 I 0.694
MLOC_69925 Hordeum vulgare MLOC_69925 I 0.693
MTR_8g022820 Medicago truncatula MTR_8g022820 I 0.693
GSMUA_Achr6G18020_001 Musa acuminata GSMUA_Achr6G18020_001 I 0.693
Aquca_020_00575 Aquilegia coerulea Aquca_020_00575 I 0.693
AMTR_s00129p00119770 Amborella trichopoda AMTR_s00129p00119770 I 0.692
e_gw1.21.268.1 Physcomitrella patens e_gw1.21.268.1 I 0.692
Pavir.J32835 Panicum virgatum Pavir.J32835 I 0.692
GSMUA_Achr6G10870_001 Musa acuminata GSMUA_Achr6G10870_001 I 0.692
GSMUA_AchrUn_randomG09790_001 Musa acuminata GSMUA_AchrUn_randomG09790_001 I 0.691
GSMUA_AchrUn_randomG27100_001 Musa acuminata GSMUA_AchrUn_randomG27100_001 I 0.691
F775_32653 Aegilops tauschii F775_32653 I 0.691
PRUPE_ppa008563mg Prunus persica PRUPE_ppa008563mg I 0.690
MLOC_13305 Hordeum vulgare MLOC_13305 I 0.690
GSMUA_Achr8G23730_001 Musa acuminata GSMUA_Achr8G23730_001 I 0.690
LPERR03G05410 Leersia perrieri LPERR03G05410 N 0.689
SapurV1A.1115s0040 Salix purpurea SapurV1A.1115s0040 I 0.688
Cagra.1582s0005 Capsella grandiflora Cagra.1582s0005 I 0.688
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I 0.688
Pm008236 Prunus mume Pm008236 I 0.688
Carubv10013925m.g Capsella rubella Carubv10013925m.g I 0.688
F775_15852 Aegilops tauschii F775_15852 I 0.688
Bra021543 Brassica rapa Bra021543 I 0.688
estExt_fgenesh1_pg.C_210126 Physcomitrella patens estExt_fgenesh1_pg.C_210126 I 0.687
e_gw1.7.264.1 Physcomitrella patens e_gw1.7.264.1 I 0.687
Q7Y1W2_TOBAC Nicotiana tabacum Q7Y1W2_TOBAC D 0.687
OB07G27820 Oryza brachyantha OB07G27820 I 0.687
gw1.126.81.1 Physcomitrella patens gw1.126.81.1 I 0.687
RAP2-2 Arabidopsis thaliana AT3G14230 D 0.687
Thhalv10020945m.g Eutrema salsugineum Thhalv10020945m.g I 0.687
GRMZM2G148333 Zea mays GRMZM2G148333 I 0.687
GLYMA09G04630 Glycine max GLYMA09G04630 I 0.687
LPERR07G19320 Leersia perrieri LPERR07G19320 I 0.687
GSMUA_Achr3G05800_001 Musa acuminata GSMUA_Achr3G05800_001 I 0.687
gw1.7.214.1 Physcomitrella patens gw1.7.214.1 I 0.687
PGSC0003DMG400016812 Solanum tuberosum PGSC0003DMG400016812 I 0.687
Solyc01g065980.2 Solanum lycopersicum Solyc01g065980.2 I 0.687
Si036118m.g Setaria italica Si036118m.g I 0.687
RAP2.2 Arabidopsis lyrata scaffold_301660.1 I 0.687
Cla012751 Citrullus lanatus Cla012751 I 0.686
gw1.293.28.1 Physcomitrella patens gw1.293.28.1 I 0.686
gw1.293.27.1 Physcomitrella patens gw1.293.27.1 I 0.686
BRADI1G72457 Brachypodium distachyon BRADI1G72457 I 0.685
Sb07g022180 Sorghum bicolor Sb07g022180 I 0.685
Cucsa.149280 Cucumis sativus Cucsa.149280 I 0.685
GRMZM2G052667 Zea mays GRMZM2G052667 I 0.685
Ca_14758 Cicer arietinum Ca_14758 I 0.685
GG.C169_S17_00183 Chlorella vulgaris GG.C169_S17_00183 I 0.685
estExt_fgenesh1_pg.C_170126 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_170126 I 0.685
Traes_6AL_DAA2D7F8A Triticum aestivum Traes_6AL_DAA2D7F8A I 0.684
Bostr.28625s0277 Boechera stricta Bostr.28625s0277 I 0.684
F775_31907 Aegilops tauschii F775_31907 I 0.684
Solyc12g049560.1 Solanum lycopersicum Solyc12g049560.1 I 0.684
F775_07667 Aegilops tauschii F775_07667 I 0.684
PGSC0003DMG400028853 Solanum tuberosum PGSC0003DMG400028853 I 0.684
F775_25662 Aegilops tauschii F775_25662 I 0.684
TRIUR3_08978 Triticum urartu TRIUR3_08978 I 0.684
Bo5g130490 Brassica oleracea Bo5g130490 I 0.684
Traes_6BL_6AEADC565 Triticum aestivum Traes_6BL_6AEADC565 I 0.684
Traes_6DL_DD82BD107 Triticum aestivum Traes_6DL_DD82BD107 I 0.684
Bra027355 Brassica rapa Bra027355 I 0.684
Traes_6AS_A9D28899F Triticum aestivum Traes_6AS_A9D28899F I 0.684
Pavir.J12680 Panicum virgatum Pavir.J12680 N 0.684
MLOC_10017 Hordeum vulgare MLOC_10017 I 0.683
Solyc03g123500.2 Solanum lycopersicum Solyc03g123500.2 I 0.682
evm.TU.supercontig_2304.1 Carica papaya evm.TU.supercontig_2304.1 I 0.682
Sb01g045050 Sorghum bicolor Sb01g045050 N 0.682
Q6TXK7_SOLLC Solanum lycopersicum Q6TXK7_SOLLC I 0.682
TCM_004710 Theobroma cacao TCM_004710 I 0.681
Cla003851 Citrullus lanatus Cla003851 I 0.681
Bra019622 Brassica rapa Bra019622 I 0.681
Sb01g045060 Sorghum bicolor Sb01g045060 I 0.681
Cucsa.365850 Cucumis sativus Cucsa.365850 I 0.681
Aquca_003_00658 Aquilegia coerulea Aquca_003_00658 I 0.681
Aquca_076_00008 Aquilegia coerulea Aquca_076_00008 I 0.681
HRE2 Vitis vinifera VIT_07s0005g00820 I 0.681
BGIOSGA005480 Oryza indica BGIOSGA005480 I 0.680
Pavir.Cb02005 Panicum virgatum Pavir.Cb02005 I 0.680
BGIOSGA022463 Oryza indica BGIOSGA022463 I 0.680
Pavir.J04335 Panicum virgatum Pavir.J04335 I 0.680
Eucgr.H03965 Eucalyptus grandis Eucgr.H03965 I 0.680
LPERR06G05580 Leersia perrieri LPERR06G05580 I 0.680
POPTR_0010s00900 Populus trichocarpa POPTR_0010s00900 I 0.680
OBART06G06020 Oryza barthii OBART06G06020 I 0.680
ONIVA02G37060 Oryza nivara ONIVA02G37060 I 0.680
OBART02G34990 Oryza barthii OBART02G34990 I 0.680
OS06G0194000 Oryza sativa OS06G0194000 I 0.680
OMERI02G32980 Oryza meridionalis OMERI02G32980 I 0.680
OGLUM02G36100 Oryza glumaepatula OGLUM02G36100 I 0.680
OGLUM06G06300 Oryza glumaepatula OGLUM06G06300 I 0.680
OMERI06G07210 Oryza meridionalis OMERI06G07210 I 0.680
EREBP1 Oryza sativa OS02G0782700 D 0.680
OLONG_013314 Oryza longistaminata OLONG_013314 I 0.680
OLONG_008836 Oryza longistaminata OLONG_008836 I 0.680
ORUFI06G06250 Oryza rufipogon ORUFI06G06250 I 0.680
OB06G15590 Oryza brachyantha OB06G15590 I 0.680
estExt_fgenesh4_pg.C_290069 Volvox carteri estExt_fgenesh4_pg.C_290069 I 0.680
OPUNC06G05780 Oryza punctata OPUNC06G05780 I 0.680
ORGLA02G0302700 Oryza glaberrima ORGLA02G0302700 I 0.680
ORUFI02G36450 Oryza rufipogon ORUFI02G36450 I 0.680
OB02G41790 Oryza brachyantha OB02G41790 I 0.680
MTR_2g435590 Medicago truncatula MTR_2g435590 I 0.680
OPUNC02G32270 Oryza punctata OPUNC02G32270 I 0.680
mgf014502m Mimulus guttatus mgf014502m I 0.679
BRADI3G60120 Brachypodium distachyon BRADI3G60120 I 0.679
GRMZM2G110333 Zea mays GRMZM2G110333 I 0.678
PGSC0003DMG400009142 Solanum tuberosum PGSC0003DMG400009142 I 0.678
OPUNC03G05900 Oryza punctata OPUNC03G05900 I 0.678
Solyc06g063070.2 Solanum lycopersicum Solyc06g063070.2 I 0.678
LPERR02G28780 Leersia perrieri LPERR02G28780 I 0.678
Bo3g109240 Brassica oleracea Bo3g109240 I 0.677
ERF114 Arabidopsis thaliana AT5G61890 I 0.677
Bo2g161710 Brassica oleracea Bo2g161710 I 0.677
Thhalv10005416m.g Eutrema salsugineum Thhalv10005416m.g I 0.677
Sb02g042760 Sorghum bicolor Sb02g042760 I 0.677
F775_26238 Aegilops tauschii F775_26238 I 0.677
Ciclev10005701m.g Citrus clementina Ciclev10005701m.g I 0.677
MLOC_77669 Hordeum vulgare MLOC_77669 I 0.677
Carubv10027012m.g Capsella rubella Carubv10027012m.g I 0.677
MLOC_59004 Hordeum vulgare MLOC_59004 I 0.677
MLOC_58276 Hordeum vulgare MLOC_58276 I 0.677
Cagra.4553s0019 Capsella grandiflora Cagra.4553s0019 I 0.677
EuGene.1100010301 Micromonas sp RCC299 EuGene.1100010301 I 0.677
scaffold_802838.1 Arabidopsis lyrata scaffold_802838.1 I 0.677
Si030514m.g Setaria italica Si030514m.g I 0.677
29726.m004094 Ricinus communis 29726.m004094 I 0.677
Bostr.26833s0047 Boechera stricta Bostr.26833s0047 I 0.677
orange1.1g025382m.g Citrus sinensis orange1.1g025382m.g I 0.677
GRMZM2G025062 Zea mays GRMZM2G025062 I 0.677
Bra029302 Brassica rapa Bra029302 I 0.677