Pavir.J12680 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J12680 T009571_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J12680.1.p AP2 69 120

Links

Other AP2 family TFs
Other Panicum virgatum TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ib00527 Panicum virgatum Pavir.Ib00527 N 0.814
Sb01g045050 Sorghum bicolor Sb01g045050 N 0.811
AC206951.3_FG016 Zea mays AC206951.3_FG016 N 0.777
OGLUM03G06090 Oryza glumaepatula OGLUM03G06090 N 0.764
ORGLA03G0058800 Oryza glaberrima ORGLA03G0058800 N 0.764
ORUFI03G05920 Oryza rufipogon ORUFI03G05920 N 0.764
ONIVA03G06100 Oryza nivara ONIVA03G06100 N 0.764
OPUNC03G05900 Oryza punctata OPUNC03G05900 I 0.749
Pavir.Ib00528 Panicum virgatum Pavir.Ib00528 I 0.739
Si036118m.g Setaria italica Si036118m.g I 0.738
Si036821m.g Setaria italica Si036821m.g N 0.738
Sb02g042760 Sorghum bicolor Sb02g042760 I 0.731
GRMZM2G025062 Zea mays GRMZM2G025062 I 0.731
OS03G0183300 Oryza sativa OS03G0183300 I 0.729
ORGLA03G0058900 Oryza glaberrima ORGLA03G0058900 I 0.729
ONIVA03G06110 Oryza nivara ONIVA03G06110 I 0.729
OMERI03G05920 Oryza meridionalis OMERI03G05920 I 0.729
OGLUM03G06100 Oryza glumaepatula OGLUM03G06100 I 0.729
OBART03G06100 Oryza barthii OBART03G06100 I 0.729
BGIOSGA011326 Oryza indica BGIOSGA011326 I 0.729
Pavir.Ia04158 Panicum virgatum Pavir.Ia04158 I 0.729
Pavir.Bb03609 Panicum virgatum Pavir.Bb03609 I 0.728
Pavir.Ba00136 Panicum virgatum Pavir.Ba00136 I 0.728
AC206951.3_FG017 Zea mays AC206951.3_FG017 I 0.728
Si031079m.g Setaria italica Si031079m.g I 0.728
OPUNC07G24590 Oryza punctata OPUNC07G24590 N 0.725
OMERI07G22780 Oryza meridionalis OMERI07G22780 N 0.725
OGLUM07G26170 Oryza glumaepatula OGLUM07G26170 N 0.725
ONIVA07G25780 Oryza nivara ONIVA07G25780 N 0.725
BGIOSGA023726 Oryza indica BGIOSGA023726 N 0.725
ORUFI07G27120 Oryza rufipogon ORUFI07G27120 N 0.725
ORGLA07G0205000 Oryza glaberrima ORGLA07G0205000 N 0.725
OBART07G26160 Oryza barthii OBART07G26160 N 0.725
OS07G0674800 Oryza sativa OS07G0674800 N 0.725
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I 0.724
Traes_4AS_8A64DBE8E Triticum aestivum Traes_4AS_8A64DBE8E I 0.724
ONIVA03G17860 Oryza nivara ONIVA03G17860 N 0.721
OS03G0341000 Oryza sativa OS03G0341000 N 0.721
OPUNC03G16250 Oryza punctata OPUNC03G16250 N 0.721
OMERI03G15020 Oryza meridionalis OMERI03G15020 N 0.721
ORUFI03G17430 Oryza rufipogon ORUFI03G17430 N 0.721
ORGLA03G0161100 Oryza glaberrima ORGLA03G0161100 N 0.721
OGLUM03G17210 Oryza glumaepatula OGLUM03G17210 N 0.721
LPERR03G14670 Leersia perrieri LPERR03G14670 N 0.721
BGIOSGA012597 Oryza indica BGIOSGA012597 N 0.721
BRADI1G72450 Brachypodium distachyon BRADI1G72450 I 0.712
Sb01g045040 Sorghum bicolor Sb01g045040 I 0.711
Sb03g012890 Sorghum bicolor Sb03g012890 I 0.708
Si002845m.g Setaria italica Si002845m.g I 0.708
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I 0.708
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I 0.708
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I 0.708
Pavir.J08480 Panicum virgatum Pavir.J08480 I 0.708
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I 0.708
OS01G0313300 Oryza sativa OS01G0313300 I 0.708
GRMZM2G169382 Zea mays GRMZM2G169382 I 0.708
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I 0.708
BGIOSGA003364 Oryza indica BGIOSGA003364 I 0.708
OMERI12G11270 Oryza meridionalis OMERI12G11270 I 0.708
GRMZM2G053503 Zea mays GRMZM2G053503 I 0.708
OPUNC01G12900 Oryza punctata OPUNC01G12900 I 0.708
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I 0.708
LPERR03G05410 Leersia perrieri LPERR03G05410 N 0.704
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.695
MDP0000322279 Malus domestica MDP0000322279 I 0.693
TCM_026233 Theobroma cacao TCM_026233 I 0.692
Bra021594 Brassica rapa Bra021594 I 0.691
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.691
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I 0.689
GLYMA19G43815 Glycine max GLYMA19G43815 I 0.689
Lus10021873.g Linum usitatissimum Lus10021873.g I 0.689
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.689
GRMZM2G114820 Zea mays GRMZM2G114820 I 0.688
e_gw1.60.113.1 Physcomitrella patens e_gw1.60.113.1 I 0.688
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.688
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I 0.688
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I 0.688
Sb02g029550 Sorghum bicolor Sb02g029550 I 0.687
GRMZM2G131281 Zea mays GRMZM2G131281 I 0.687
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.687
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.687
mgf018693m Mimulus guttatus mgf018693m I 0.687
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.684
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.684
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.684
Lus10006796.g Linum usitatissimum Lus10006796.g I 0.684
Lus10005805.g Linum usitatissimum Lus10005805.g I 0.684
Pavir.Ib02796 Panicum virgatum Pavir.Ib02796 I 0.684
Ca_07754 Cicer arietinum Ca_07754 I 0.684
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.684
Traes_2AS_72E9B68D2 Triticum aestivum Traes_2AS_72E9B68D2 I 0.683
Traes_2BS_5E7287209 Triticum aestivum Traes_2BS_5E7287209 I 0.683
MLOC_51143 Hordeum vulgare MLOC_51143 I 0.683
GRMZM2G148333 Zea mays GRMZM2G148333 I 0.683
OMERI10G05820 Oryza meridionalis OMERI10G05820 I 0.682
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I 0.682
BGIOSGA032849 Oryza indica BGIOSGA032849 I 0.682
ORUFI10G09060 Oryza rufipogon ORUFI10G09060 I 0.682
OS10G0390800 Oryza sativa OS10G0390800 I 0.682
ONIVA10G08250 Oryza nivara ONIVA10G08250 I 0.682
OGLUM10G08400 Oryza glumaepatula OGLUM10G08400 I 0.682
ORGLA10G0072500 Oryza glaberrima ORGLA10G0072500 I 0.682
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I 0.682
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I 0.682
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.680
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I 0.679
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I 0.679
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I 0.679
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I 0.679
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I 0.679
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I 0.679
Cucsa.062330 Cucumis sativus Cucsa.062330 I 0.679
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I 0.677
Si032815m.g Setaria italica Si032815m.g I 0.677
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I 0.677
GRMZM2G478965 Zea mays GRMZM2G478965 I 0.677