Pavir.J17768 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J17768 T009585_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.719 0.769
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J17768.1.p AP2 63 115

Links

Other AP2 family TFs
Other Panicum virgatum TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J30299 Panicum virgatum Pavir.J30299 I 0.796
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I 0.790
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I 0.790
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I 0.789
Si027485m.g Setaria italica Si027485m.g I 0.787
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I 0.774
Si028088m.g Setaria italica Si028088m.g I 0.755
Pavir.J01078 Panicum virgatum Pavir.J01078 I 0.751
GRMZM2G073258 Zea mays GRMZM2G073258 I 0.750
GRMZM5G837876 Zea mays GRMZM5G837876 I 0.750
Si031946m.g Setaria italica Si031946m.g I 0.738
Pavir.J37124 Panicum virgatum Pavir.J37124 I 0.738
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I 0.738
OPUNC09G18690 Oryza punctata OPUNC09G18690 I 0.735
OB09G27130 Oryza brachyantha OB09G27130 I 0.735
TRIUR3_16508 Triticum urartu TRIUR3_16508 I 0.733
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I 0.733
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I 0.733
MLOC_43207 Hordeum vulgare MLOC_43207 I 0.733
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I 0.732
Pavir.Ha00304 Panicum virgatum Pavir.Ha00304 I 0.732
OS09G0572000 Oryza sativa OS09G0572000 I 0.732
Si028219m.g Setaria italica Si028219m.g I 0.732
Si028135m.g Setaria italica Si028135m.g I 0.732
Sb02g012630 Sorghum bicolor Sb02g012630 I 0.732
OBART09G20410 Oryza barthii OBART09G20410 I 0.732
BGIOSGA031313 Oryza indica BGIOSGA031313 I 0.732
ONIVA09G20840 Oryza nivara ONIVA09G20840 I 0.732
LPERR09G16380 Leersia perrieri LPERR09G16380 I 0.732
OLONG_005597 Oryza longistaminata OLONG_005597 I 0.732
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I 0.732
GRMZM2G123119 Zea mays GRMZM2G123119 I 0.731
Pavir.Bb00653 Panicum virgatum Pavir.Bb00653 I 0.727
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I 0.727
Sb05g026843 Sorghum bicolor Sb05g026843 I 0.725
ERF094 Arabidopsis thaliana AT1G06160 D 0.719
Pavir.Bb00652 Panicum virgatum Pavir.Bb00652 I 0.716
Traes_4DS_9C01B536B Triticum aestivum Traes_4DS_9C01B536B I 0.715
Pavir.J02630 Panicum virgatum Pavir.J02630 I 0.711
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I 0.711
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I 0.707
Ca_12221 Cicer arietinum Ca_12221 I 0.707
GSMUA_Achr5G19610_001 Musa acuminata GSMUA_Achr5G19610_001 I 0.705
GSMUA_Achr11G22020_001 Musa acuminata GSMUA_Achr11G22020_001 I 0.705
Eucgr.K03266 Eucalyptus grandis Eucgr.K03266 I 0.702
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I 0.702
VIT_07s0005g03260 Vitis vinifera VIT_07s0005g03260 I 0.701
VIT_07s0005g03230 Vitis vinifera VIT_07s0005g03230 I 0.701
MTR_7g096830 Medicago truncatula MTR_7g096830 I 0.698
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I 0.697
Gorai.001G253000 Gossypium raimondii Gorai.001G253000 I 0.695
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I 0.692
Cucsa.255340 Cucumis sativus Cucsa.255340 I 0.691
MTR_1g069940 Medicago truncatula MTR_1g069940 I 0.691
TRIUR3_29784 Triticum urartu TRIUR3_29784 I 0.691
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I 0.691
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I 0.690
Cla021850 Citrullus lanatus Cla021850 I 0.689
VIT_07s0005g03270 Vitis vinifera VIT_07s0005g03270 I 0.687
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.686
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I 0.685
MDP0000855671 Malus domestica MDP0000855671 I 0.685
MDP0000235313 Malus domestica MDP0000235313 I 0.684
MDP0000167207 Malus domestica MDP0000167207 I 0.684
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.684
GLYMA20G34570 Glycine max GLYMA20G34570 I 0.684
GLYMA10G33060 Glycine max GLYMA10G33060 I 0.684
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.684
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.684
MDP0000127134 Malus domestica MDP0000127134 I 0.684
Pm009382 Prunus mume Pm009382 I 0.684
Ca_23170 Cicer arietinum Ca_23170 I 0.684
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.684
GLYMA10G04170 Glycine max GLYMA10G04170 I 0.683
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.683
SapurV1A.0132s0310 Salix purpurea SapurV1A.0132s0310 I 0.683
TCM_004052 Theobroma cacao TCM_004052 I 0.683
GLYMA10G00980 Glycine max GLYMA10G00980 I 0.682
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.682
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.682
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.682
Cla006080 Citrullus lanatus Cla006080 I 0.682
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I 0.681
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I 0.681
F775_22020 Aegilops tauschii F775_22020 I 0.681
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.680
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.680
Cla007697 Citrullus lanatus Cla007697 I 0.680
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.680
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.680
29895.m000321 Ricinus communis 29895.m000321 I 0.678
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I 0.678
AMTR_s00009p00143340 Amborella trichopoda AMTR_s00009p00143340 I 0.677