Pavir.J30299 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J30299 T009629_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF094
M01602_2.00
Arabidopsis thaliana
VGCCGCCD

HGGCGGCB
PBM
Weirauch et al.(2014)
pTH8276
0.777 0.788
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J30299.1.p AP2 62 114

Links

Other AP2 family TFs
Other Panicum virgatum TFs

282 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I 0.858
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I 0.851
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I 0.851
Si027485m.g Setaria italica Si027485m.g I 0.848
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I 0.836
Si028088m.g Setaria italica Si028088m.g I 0.815
Pavir.J01078 Panicum virgatum Pavir.J01078 I 0.812
GRMZM5G837876 Zea mays GRMZM5G837876 I 0.811
GRMZM2G073258 Zea mays GRMZM2G073258 I 0.811
Pavir.J37124 Panicum virgatum Pavir.J37124 I 0.799
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I 0.799
Si031946m.g Setaria italica Si031946m.g I 0.799
OPUNC09G18690 Oryza punctata OPUNC09G18690 I 0.796
Pavir.J17768 Panicum virgatum Pavir.J17768 I 0.796
OB09G27130 Oryza brachyantha OB09G27130 I 0.796
TRIUR3_16508 Triticum urartu TRIUR3_16508 I 0.794
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I 0.794
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I 0.794
MLOC_43207 Hordeum vulgare MLOC_43207 I 0.794
Pavir.Ha00304 Panicum virgatum Pavir.Ha00304 I 0.793
Sb02g012630 Sorghum bicolor Sb02g012630 I 0.793
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I 0.793
OS09G0572000 Oryza sativa OS09G0572000 I 0.793
GRMZM2G123119 Zea mays GRMZM2G123119 I 0.793
ONIVA09G20840 Oryza nivara ONIVA09G20840 I 0.793
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I 0.793
BGIOSGA031313 Oryza indica BGIOSGA031313 I 0.793
Si028135m.g Setaria italica Si028135m.g I 0.793
OLONG_005597 Oryza longistaminata OLONG_005597 I 0.793
Si028219m.g Setaria italica Si028219m.g I 0.793
LPERR09G16380 Leersia perrieri LPERR09G16380 I 0.793
OBART09G20410 Oryza barthii OBART09G20410 I 0.793
Pavir.Bb00653 Panicum virgatum Pavir.Bb00653 I 0.788
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I 0.788
Sb05g026843 Sorghum bicolor Sb05g026843 I 0.786
Pavir.Bb00652 Panicum virgatum Pavir.Bb00652 I 0.777
ERF094 Arabidopsis thaliana AT1G06160 D 0.777
Traes_4DS_9C01B536B Triticum aestivum Traes_4DS_9C01B536B I 0.776
Pavir.J02630 Panicum virgatum Pavir.J02630 I 0.772
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I 0.772
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I 0.768
Ca_12221 Cicer arietinum Ca_12221 I 0.765
GSMUA_Achr11G22020_001 Musa acuminata GSMUA_Achr11G22020_001 I 0.763
GSMUA_Achr5G19610_001 Musa acuminata GSMUA_Achr5G19610_001 I 0.763
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I 0.763
Eucgr.K03266 Eucalyptus grandis Eucgr.K03266 I 0.760
VIT_07s0005g03230 Vitis vinifera VIT_07s0005g03230 I 0.760
VIT_07s0005g03260 Vitis vinifera VIT_07s0005g03260 I 0.760
Gorai.001G253000 Gossypium raimondii Gorai.001G253000 I 0.756
MTR_7g096830 Medicago truncatula MTR_7g096830 I 0.756
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I 0.755
Cucsa.255340 Cucumis sativus Cucsa.255340 I 0.753
TRIUR3_29784 Triticum urartu TRIUR3_29784 I 0.752
Cla021850 Citrullus lanatus Cla021850 I 0.751
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I 0.751
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I 0.750
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I 0.750
MTR_1g069940 Medicago truncatula MTR_1g069940 I 0.749
VIT_07s0005g03270 Vitis vinifera VIT_07s0005g03270 I 0.748
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.744
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.744
TCM_004052 Theobroma cacao TCM_004052 I 0.744
Cla006080 Citrullus lanatus Cla006080 I 0.743
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I 0.743
MDP0000855671 Malus domestica MDP0000855671 I 0.743
GLYMA10G04170 Glycine max GLYMA10G04170 I 0.743
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.742
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.742
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.742
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.742
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.742
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.742
Pm009382 Prunus mume Pm009382 I 0.742
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I 0.742
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I 0.742
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.742
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.742
MDP0000127134 Malus domestica MDP0000127134 I 0.742
MDP0000167207 Malus domestica MDP0000167207 I 0.742
MDP0000235313 Malus domestica MDP0000235313 I 0.742
GLYMA20G34570 Glycine max GLYMA20G34570 I 0.742
GLYMA10G33060 Glycine max GLYMA10G33060 I 0.742
F775_22020 Aegilops tauschii F775_22020 I 0.742
Ca_23170 Cicer arietinum Ca_23170 I 0.742
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.742
Cla007697 Citrullus lanatus Cla007697 I 0.742
SapurV1A.0132s0310 Salix purpurea SapurV1A.0132s0310 I 0.741
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.741
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.741
29895.m000321 Ricinus communis 29895.m000321 I 0.740
GLYMA10G00980 Glycine max GLYMA10G00980 I 0.740
F775_52314 Aegilops tauschii F775_52314 I 0.738
Traes_5BL_4E044468C Triticum aestivum Traes_5BL_4E044468C I 0.738
Traes_5DL_53D8DF9CD Triticum aestivum Traes_5DL_53D8DF9CD I 0.738
AMTR_s00009p00143340 Amborella trichopoda AMTR_s00009p00143340 I 0.738
MLOC_77420 Hordeum vulgare MLOC_77420 I 0.738
Traes_4BL_39AE2989D Triticum aestivum Traes_4BL_39AE2989D I 0.738
Cucsa.388530 Cucumis sativus Cucsa.388530 I 0.737
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I 0.736
F775_22331 Aegilops tauschii F775_22331 I 0.734
TCM_020871 Theobroma cacao TCM_020871 I 0.734
Traes_4DL_CB92B5ABB Triticum aestivum Traes_4DL_CB92B5ABB I 0.734
Pm020604 Prunus mume Pm020604 I 0.733
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I 0.733
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.733
GSMUA_Achr4G12060_001 Musa acuminata GSMUA_Achr4G12060_001 I 0.732
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I 0.732
Lus10022935.g Linum usitatissimum Lus10022935.g I 0.731
Pavir.Ib03413 Panicum virgatum Pavir.Ib03413 I 0.730
GLYMA13G18350 Glycine max GLYMA13G18350 I 0.730
GLYMA13G18390 Glycine max GLYMA13G18390 I 0.730
GLYMA13G18370 Glycine max GLYMA13G18370 I 0.729
GLYMA02G00870 Glycine max GLYMA02G00870 I 0.729
29680.m001678 Ricinus communis 29680.m001678 I 0.729
Sb02g005810 Sorghum bicolor Sb02g005810 I 0.729
Sb02g005840 Sorghum bicolor Sb02g005840 I 0.729
Lus10022015.g Linum usitatissimum Lus10022015.g I 0.728
Pavir.Ba03491 Panicum virgatum Pavir.Ba03491 I 0.728
Pavir.J28684 Panicum virgatum Pavir.J28684 I 0.728
Lus10042557.g Linum usitatissimum Lus10042557.g I 0.728
SapurV1A.0270s0240 Salix purpurea SapurV1A.0270s0240 I 0.727
Si033089m.g Setaria italica Si033089m.g I 0.727
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I 0.727
mgf020623m Mimulus guttatus mgf020623m I 0.726
GSMUA_Achr3G15550_001 Musa acuminata GSMUA_Achr3G15550_001 I 0.726
GLYMA19G34696 Glycine max GLYMA19G34696 I 0.724
GLYMA03G31940 Glycine max GLYMA03G31940 I 0.724
OBART07G11330 Oryza barthii OBART07G11330 I 0.723
BGIOSGA024429 Oryza indica BGIOSGA024429 I 0.723
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I 0.723
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I 0.723
ONIVA01G50300 Oryza nivara ONIVA01G50300 I 0.723
Gorai.004G057000 Gossypium raimondii Gorai.004G057000 I 0.722
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I 0.721
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I 0.721
OS07G0410700 Oryza sativa OS07G0410700 I 0.721
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I 0.721
OPUNC07G10310 Oryza punctata OPUNC07G10310 I 0.721
ONIVA07G09500 Oryza nivara ONIVA07G09500 I 0.721
OBART07G11340 Oryza barthii OBART07G11340 I 0.721
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I 0.721
Carubv10010105m.g Capsella rubella Carubv10010105m.g I 0.721
BGIOSGA024428 Oryza indica BGIOSGA024428 I 0.721
AC233933.1_FG001 Zea mays AC233933.1_FG001 I 0.721
Bostr.25219s0341 Boechera stricta Bostr.25219s0341 I 0.721
Cagra.1671s0247 Capsella grandiflora Cagra.1671s0247 I 0.721
Gorai.011G173000 Gossypium raimondii Gorai.011G173000 I 0.720
F775_25471 Aegilops tauschii F775_25471 I 0.720
MLOC_80197 Hordeum vulgare MLOC_80197 I 0.720
Thhalv10008518m.g Eutrema salsugineum Thhalv10008518m.g I 0.720
Cla015066 Citrullus lanatus Cla015066 I 0.720
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I 0.720
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I 0.719
Bo8g114710 Brassica oleracea Bo8g114710 I 0.719
Bo5g007280 Brassica oleracea Bo5g007280 I 0.719
VIT_14s0081g00730 Vitis vinifera VIT_14s0081g00730 I 0.719
POPTR_0019s03170 Populus trichocarpa POPTR_0019s03170 I 0.719
POPTR_0102s00200 Populus trichocarpa POPTR_0102s00200 I 0.719
BRADI1G00670 Brachypodium distachyon BRADI1G00670 I 0.718
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I 0.718
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I 0.718
LPERR07G06830 Leersia perrieri LPERR07G06830 I 0.718
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I 0.717
mgf023779m Mimulus guttatus mgf023779m I 0.716
Gorai.010G156600 Gossypium raimondii Gorai.010G156600 I 0.716
OPUNC03G38860 Oryza punctata OPUNC03G38860 I 0.715
Si038911m.g Setaria italica Si038911m.g I 0.715
GLYMA13G18340 Glycine max GLYMA13G18340 I 0.715
MTR_4g054860 Medicago truncatula MTR_4g054860 I 0.714
mgf021081m Mimulus guttatus mgf021081m I 0.711
Si032815m.g Setaria italica Si032815m.g I 0.711
GLYMA19G34670 Glycine max GLYMA19G34670 I 0.711
29900.m001561 Ricinus communis 29900.m001561 I 0.710
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I 0.710
Pavir.Ia00066 Panicum virgatum Pavir.Ia00066 I 0.710
29584.m000234 Ricinus communis 29584.m000234 I 0.710
GRMZM2G478965 Zea mays GRMZM2G478965 I 0.709
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I 0.709
TCM_004056 Theobroma cacao TCM_004056 I 0.709
Gorai.007G145800 Gossypium raimondii Gorai.007G145800 I 0.709
Bra015478 Brassica rapa Bra015478 I 0.708
F775_22648 Aegilops tauschii F775_22648 N 0.708
GRMZM2G379652 Zea mays GRMZM2G379652 I 0.707
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I 0.707
F775_01237 Aegilops tauschii F775_01237 N 0.705
ORA59 Arabidopsis lyrata fgenesh2_kg.1__587__AT1G06160.1 I 0.705
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I 0.704
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I 0.704
Pavir.Hb01232 Panicum virgatum Pavir.Hb01232 N 0.703
Sb05g022110 Sorghum bicolor Sb05g022110 I 0.703
Pavir.J16149 Panicum virgatum Pavir.J16149 I 0.702
MTR_4g054360 Medicago truncatula MTR_4g054360 I 0.699
Sb01g000352 Sorghum bicolor Sb01g000352 I 0.698
TCM_026234 Theobroma cacao TCM_026234 I 0.698
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.698
MTR_1g070000 Medicago truncatula MTR_1g070000 I 0.697
MTR_1g070020 Medicago truncatula MTR_1g070020 I 0.697
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.697
Gorai.013G186700 Gossypium raimondii Gorai.013G186700 I 0.697
GRMZM2G381441 Zea mays GRMZM2G381441 I 0.696
mgf018693m Mimulus guttatus mgf018693m I 0.696
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.695
MDP0000322279 Malus domestica MDP0000322279 I 0.695
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.695
MTR_1g070015 Medicago truncatula MTR_1g070015 I 0.694
PK23186.1 Cannabis sativa PK23186.1 I 0.694
MTR_1g070045 Medicago truncatula MTR_1g070045 I 0.694
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I 0.693
AMTR_s00021p00184450 Amborella trichopoda AMTR_s00021p00184450 I 0.692
ONIVA03G03670 Oryza nivara ONIVA03G03670 I 0.691
OLONG_008277 Oryza longistaminata OLONG_008277 I 0.691
OGLUM03G03790 Oryza glumaepatula OGLUM03G03790 I 0.691
OBART03G03890 Oryza barthii OBART03G03890 I 0.691
OS03G0150200 Oryza sativa OS03G0150200 I 0.691
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I 0.691
LPERR03G03540 Leersia perrieri LPERR03G03540 I 0.691
BGIOSGA011868 Oryza indica BGIOSGA011868 I 0.691
ORGLA03G0036700 Oryza glaberrima ORGLA03G0036700 I 0.691
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I 0.691
ORUFI03G03630 Oryza rufipogon ORUFI03G03630 I 0.691
MDP0000246808 Malus domestica MDP0000246808 I 0.690
MDP0000447570 Malus domestica MDP0000447570 I 0.690
MTR_1g069985 Medicago truncatula MTR_1g069985 I 0.690
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I 0.690
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I 0.690
Cucsa.062330 Cucumis sativus Cucsa.062330 I 0.690
Traes_4BS_591F7718A Triticum aestivum Traes_4BS_591F7718A N 0.689
MTR_1g074370 Medicago truncatula MTR_1g074370 I 0.689
OPUNC03G03600 Oryza punctata OPUNC03G03600 I 0.689
Ca_12081 Cicer arietinum Ca_12081 I 0.689
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I 0.688
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I 0.688
Pavir.Ga02734 Panicum virgatum Pavir.Ga02734 N 0.687
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I 0.687
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I 0.687
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I 0.687
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I 0.687
BRADI1G75040 Brachypodium distachyon BRADI1G75040 I 0.685
LPERR10G08470 Leersia perrieri LPERR10G08470 I 0.685
GRMZM2G024871 Zea mays GRMZM2G024871 I 0.685
Si039310m.g Setaria italica Si039310m.g I 0.685
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.685
Sb01g020555 Sorghum bicolor Sb01g020555 I 0.685
Lus10021873.g Linum usitatissimum Lus10021873.g I 0.684
chr5.CM0341.90.nc Lotus japonicus chr5.CM0341.90.nc I 0.683
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.683
SapurV1A.0816s0060 Salix purpurea SapurV1A.0816s0060 I 0.683
orange1.1g039729m.g Citrus sinensis orange1.1g039729m.g I 0.683
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.683
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.683
Ca_07754 Cicer arietinum Ca_07754 I 0.682
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.682
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.682
Bra010880 Brassica rapa Bra010880 I 0.681
Ciclev10023352m.g Citrus clementina Ciclev10023352m.g I 0.681
Bo3g143350 Brassica oleracea Bo3g143350 I 0.681
orange1.1g043029m.g Citrus sinensis orange1.1g043029m.g I 0.681
SELMODRAFT_80895 Selaginella moellendorffii SELMODRAFT_80895 I 0.680
SELMODRAFT_37123 Selaginella moellendorffii SELMODRAFT_37123 I 0.680
Pavir.Ia01823 Panicum virgatum Pavir.Ia01823 I 0.680
Pavir.J22854 Panicum virgatum Pavir.J22854 I 0.679
OB03G13950 Oryza brachyantha OB03G13950 I 0.679
AC198979.4_FG009 Zea mays AC198979.4_FG009 I 0.679
Pavir.Ib00287 Panicum virgatum Pavir.Ib00287 I 0.679
Si039759m.g Setaria italica Si039759m.g I 0.679
Sb01g046920 Sorghum bicolor Sb01g046920 I 0.679
MLOC_238 Hordeum vulgare MLOC_238 I 0.679
TCM_026233 Theobroma cacao TCM_026233 I 0.678
ORUFI04G26530 Oryza rufipogon ORUFI04G26530 I 0.678
OS04G0610400 Oryza sativa OS04G0610400 I 0.678
POPTR_0004s05100 Populus trichocarpa POPTR_0004s05100 I 0.678
BGIOSGA017088 Oryza indica BGIOSGA017088 I 0.678
PRUPE_ppa013137mg Prunus persica PRUPE_ppa013137mg I 0.678
OPUNC04G22340 Oryza punctata OPUNC04G22340 I 0.678
OBART04G25320 Oryza barthii OBART04G25320 I 0.678
LPERR04G20430 Leersia perrieri LPERR04G20430 I 0.678
OGLUM04G24780 Oryza glumaepatula OGLUM04G24780 I 0.678
SapurV1A.0012s0890 Salix purpurea SapurV1A.0012s0890 I 0.678
ONIVA04G24000 Oryza nivara ONIVA04G24000 I 0.678
OMERI04G20480 Oryza meridionalis OMERI04G20480 I 0.678
ORGLA04G0219400 Oryza glaberrima ORGLA04G0219400 I 0.678
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.677