CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J32690
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.J32690
T009633_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.751
0.776
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.740
0.816
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.733
0.796
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.729
0.796
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.729
0.796
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN
NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.723
0.857
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.722
0.776
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.722
0.776
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.722
0.776
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.711
0.776
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.703
0.735
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.703
0.735
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.703
0.735
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.696
0.694
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC
GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.692
0.714
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.692
0.714
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.692
0.714
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN
NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.691
0.694
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN
NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.691
0.694
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.691
0.714
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.691
0.714
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.691
0.776
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.691
0.776
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.691
0.776
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.688
0.714
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.688
0.714
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.688
0.714
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.687
0.714
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD
HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.687
0.714
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.685
0.673
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.685
0.673
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.685
0.673
O65242_TOBAC
M09730_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.684
0.673
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J32690.1.p
AP2
4
55
SKYRGVRRRPWGKWAAEIRDPHRAARKWLGTFDTAEDAARAYDIAAVEFRGQ
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
1132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy