Pavir.J37967 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J37967 T009648_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8H769_WHEAT
M09721_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1_01
0.767 0.918
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.727 0.857
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.695 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J37967.1.p AP2 132 183

Links

Other AP2 family TFs
Other Panicum virgatum TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.796
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.791
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.788
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.786
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.783
OB01G13930 Oryza brachyantha OB01G13930 I 0.783
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.783
OBART01G04210 Oryza barthii OBART01G04210 I 0.783
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.783
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.783
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.783
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.783
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.783
DREB2A Oryza sativa OS01G0165000 I 0.783
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.783
Si002067m.g Setaria italica Si002067m.g I 0.777
F775_05774 Aegilops tauschii F775_05774 I 0.767
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.767
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.767
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.767
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.767
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.767
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.757
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.741
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.738
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.737
29729.m002292 Ricinus communis 29729.m002292 I 0.731
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.730
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.728
PK07402.1 Cannabis sativa PK07402.1 D 0.727
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.724
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.719
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.719
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.719
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.718
Cla006713 Citrullus lanatus Cla006713 I 0.718
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.718
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.718
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.717
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.717
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.712
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.710
MDP0000153866 Malus domestica MDP0000153866 I 0.708
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.707
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.707
MDP0000165880 Malus domestica MDP0000165880 I 0.706
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.706
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.704
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.704
MDP0000446783 Malus domestica MDP0000446783 I 0.702
MDP0000147009 Malus domestica MDP0000147009 I 0.702
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.702
Pm018989 Prunus mume Pm018989 I 0.701
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.701
PK07829.1 Cannabis sativa PK07829.1 I 0.700
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.697
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.697
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.697
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.696
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.695
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.695
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.695
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.695
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.695
Bo9g155940 Brassica oleracea Bo9g155940 I 0.695
Pm015262 Prunus mume Pm015262 I 0.695
Bo9g177130 Brassica oleracea Bo9g177130 I 0.695
Bra002159 Brassica rapa Bra002159 I 0.695
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.695
DREB2G Arabidopsis thaliana AT5G18450 D 0.695
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.695
Bo4g190040 Brassica oleracea Bo4g190040 I 0.694
Bra017011 Brassica rapa Bra017011 I 0.694
MDP0000290585 Malus domestica MDP0000290585 I 0.694
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I 0.692
MDP0000880312 Malus domestica MDP0000880312 I 0.692
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.692
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.692
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.690
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.689
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.685
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.685
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.685
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.682
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.682
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.682
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.681
TCM_043302 Theobroma cacao TCM_043302 I 0.681
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.681
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.681
F775_32062 Aegilops tauschii F775_32062 I 0.681
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.681
TCM_043306 Theobroma cacao TCM_043306 I 0.681
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.681
mgf017629m Mimulus guttatus mgf017629m I 0.680
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.680
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.678
TCM_043275 Theobroma cacao TCM_043275 I 0.678
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.678
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.677
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.677