Pavir.J37968 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J37968 T009649_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.813 0.828
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.813 0.929
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.810 0.909
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.798 0.919
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J37968.1.p AP2 112 162
Pavir.J37968.1.p AP2 204 255

Links

Other AP2 family TFs
Other Panicum virgatum TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.843
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.843
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.843
Si029636m.g Setaria italica Si029636m.g I 0.843
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.838
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.838
OBART07G08110 Oryza barthii OBART07G08110 I 0.838
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.838
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.838
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.838
OS07G0235800 Oryza sativa OS07G0235800 I 0.838
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.838
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.838
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.838
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.837
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.837
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.834
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.834
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.834
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.834
Si036068m.g Setaria italica Si036068m.g I 0.834
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.832
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.832
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.832
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.832
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.832
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.832
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.829
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.828
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.827
OB03G45870 Oryza brachyantha OB03G45870 I 0.824
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.824
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.823
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.821
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.820
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.819
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.819
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.818
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.818
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.818
Cla018124 Citrullus lanatus Cla018124 I 0.818
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.817
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.817
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.817
Ca_02499 Cicer arietinum Ca_02499 I 0.817
PK07183.1 Cannabis sativa PK07183.1 I 0.817
MDP0000200319 Malus domestica MDP0000200319 I 0.817
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.817
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.816
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.816
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.816
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.816
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.816
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.816
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.816
TCM_022077 Theobroma cacao TCM_022077 I 0.816
Pm002492 Prunus mume Pm002492 I 0.816
28752.m000339 Ricinus communis 28752.m000339 I 0.816
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.815
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.815
Si025305m.g Setaria italica Si025305m.g I 0.815
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.815
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.815
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.815
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.815
TCM_000665 Theobroma cacao TCM_000665 I 0.815
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.815
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.815
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.815
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.815
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.815
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.815
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.815
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.815
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.815
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.815
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.815
OS05G0121600 Oryza sativa OS05G0121600 I 0.815
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.814
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.814
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.814
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.814
P93632_MAIZE Zea mays P93632_MAIZE D 0.813
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.813
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.813
Bo4g070350 Brassica oleracea Bo4g070350 I 0.813
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.813
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.813
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.813
Bra011939 Brassica rapa Bra011939 I 0.813
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.813
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.812
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.812
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.812
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.812
29805.m001494 Ricinus communis 29805.m001494 I 0.812
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.811
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.811
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.811
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.811
Cla000716 Citrullus lanatus Cla000716 I 0.811
MDP0000181606 Malus domestica MDP0000181606 I 0.811
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.811
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.811
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.811
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.811
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.811
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.811
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.811
Pm000974 Prunus mume Pm000974 I 0.811
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.811
PK02403.1 Cannabis sativa PK02403.1 I 0.811
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.811
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.811
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.811
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.811
Ca_09295 Cicer arietinum Ca_09295 I 0.810
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.810
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.810
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.810
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.810
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.810
TCM_042000 Theobroma cacao TCM_042000 I 0.810
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.810
Bra017809 Brassica rapa Bra017809 I 0.810
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.810
F775_32962 Aegilops tauschii F775_32962 I 0.810
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.810
Bra011741 Brassica rapa Bra011741 I 0.810
Bo7g118400 Brassica oleracea Bo7g118400 I 0.810
AP2 Arabidopsis thaliana AT4G36920 I 0.810
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.810
Bo1g004960 Brassica oleracea Bo1g004960 I 0.810
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.810
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.810
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.810
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.810
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.810
mgf021945m Mimulus guttatus mgf021945m I 0.810
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.810
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.810
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.810
mgf009315m Mimulus guttatus mgf009315m I 0.810
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.810
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.809
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.809
Si012635m.g Setaria italica Si012635m.g I 0.808
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.808
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.808
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.808
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.808
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.808
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.808
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.808
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.808
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.808
Ca_14618 Cicer arietinum Ca_14618 I 0.808
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.808
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.808
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.807
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.807
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.805
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.805
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.803
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.802
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.802
29169.m000017 Ricinus communis 29169.m000017 I 0.801
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.801
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.800
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.800
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.799
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.799
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.798
Ca_12010 Cicer arietinum Ca_12010 I 0.798
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.798
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.797
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.797
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.797
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.797
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.796
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.795
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.795
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.795
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.795
Pm030172 Prunus mume Pm030172 I 0.795
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.794
MDP0000137561 Malus domestica MDP0000137561 I 0.794
mgf005133m Mimulus guttatus mgf005133m I 0.792
mgf010466m Mimulus guttatus mgf010466m I 0.792
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.792
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.792
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.791
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.790
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.790
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.790
OB06G29960 Oryza brachyantha OB06G29960 I 0.789
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.789
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.789
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.789
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.789
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.789
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.788
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.787
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.787
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.785
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.782
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.782
MDP0000163645 Malus domestica MDP0000163645 I 0.779
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.779
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.779
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.778
OS03G0818800 Oryza sativa OS03G0818800 I 0.774
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.774
Cla020549 Citrullus lanatus Cla020549 I 0.773
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.773
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.772
Bo7g064000 Brassica oleracea Bo7g064000 I 0.770
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.770
Bra012139 Brassica rapa Bra012139 I 0.770
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.764
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.763
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.762
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.761
TOE3 Arabidopsis thaliana AT5G67180 I 0.761
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.761
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.761
Cla018549 Citrullus lanatus Cla018549 I 0.760
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.760
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.760
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.760
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.757
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.755
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.752
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.752
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.746
Si006371m.g Setaria italica Si006371m.g I 0.702
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.679