CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J38620
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.J38620
T009650_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
abi4
M02648_2.00
Zea mays
CGSYGCYBYB
VRVRGCRSCG
SELEX
Mathelier et al.(2014)
MA0123.1
0.819
1.000
abi4
M09706_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABI4_01
0.819
1.000
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J38620.1.p
AP2
39
90
FRYRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEDAARAYDRAALLLYGP
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy