Pavir.J41060 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J41060 T009652_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.836 0.949
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.831 0.919
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.819 0.919
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.787 0.808
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J41060.1.p AP2 111 161
Pavir.J41060.1.p AP2 203 254

Links

Other AP2 family TFs
Other Panicum virgatum TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28752.m000339 Ricinus communis 28752.m000339 I 0.839
29169.m000017 Ricinus communis 29169.m000017 I 0.819
29805.m001494 Ricinus communis 29805.m001494 I 0.833
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.838
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.813
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.840
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.838
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.838
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.836
AP2 Arabidopsis thaliana AT4G36920 I 0.831
TOE3 Arabidopsis thaliana AT5G67180 I 0.780
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.855
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.828
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.838
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.808
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.859
Bo1g004960 Brassica oleracea Bo1g004960 I 0.831
Bo4g070350 Brassica oleracea Bo4g070350 I 0.832
Bo7g064000 Brassica oleracea Bo7g064000 I 0.790
Bo7g118400 Brassica oleracea Bo7g118400 I 0.831
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.780
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.831
Bra011741 Brassica rapa Bra011741 I 0.831
Bra011939 Brassica rapa Bra011939 I 0.832
Bra012139 Brassica rapa Bra012139 I 0.790
Bra017809 Brassica rapa Bra017809 I 0.831
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.788
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.858
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.833
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.827
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.779
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.836
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.831
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.831
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.836
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.779
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.819
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.838
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.797
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.816
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.838
Ca_02499 Cicer arietinum Ca_02499 I 0.840
Ca_09295 Cicer arietinum Ca_09295 I 0.831
Ca_12010 Cicer arietinum Ca_12010 I 0.819
Ca_14618 Cicer arietinum Ca_14618 I 0.831
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.829
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.838
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.776
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.800
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.838
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.805
Cla000716 Citrullus lanatus Cla000716 I 0.830
Cla018124 Citrullus lanatus Cla018124 I 0.844
Cla018549 Citrullus lanatus Cla018549 I 0.781
Cla020549 Citrullus lanatus Cla020549 I 0.794
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.822
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.785
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.830
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.844
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.835
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.830
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.814
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.840
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.816
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.800
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.830
F775_32962 Aegilops tauschii F775_32962 I 0.833
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.780
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.831
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.778
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.814
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.780
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.830
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.835
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.830
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.838
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.838
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.840
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.813
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.830
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.813
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.837
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.830
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.833
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.833
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.836
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.822
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.810
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.787
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.828
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.856
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.811
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.834
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.864
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.837
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.818
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.833
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.830
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.831
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.820
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.833
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.807
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.838
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.845
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.848
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.831
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.829
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.802
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.839
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.825
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.848
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.832
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.831
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.844
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.775
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.812
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.793
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.820
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.798
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.810
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.820
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.814
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.823
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.814
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.777
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.784
MDP0000137561 Malus domestica MDP0000137561 I 0.815
MDP0000163645 Malus domestica MDP0000163645 I 0.800
MDP0000181606 Malus domestica MDP0000181606 I 0.834
MDP0000200319 Malus domestica MDP0000200319 I 0.838
mgf005133m Mimulus guttatus mgf005133m I 0.811
mgf009315m Mimulus guttatus mgf009315m I 0.829
mgf010466m Mimulus guttatus mgf010466m I 0.811
mgf021945m Mimulus guttatus mgf021945m I 0.830
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.786
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.860
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.844
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.835
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.831
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.830
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.819
OB03G45870 Oryza brachyantha OB03G45870 I 0.847
OB06G29960 Oryza brachyantha OB06G29960 I 0.808
OBART07G08110 Oryza barthii OBART07G08110 I 0.859
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.855
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.828
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.808
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.859
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.859
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.775
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.855
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.828
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.808
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.859
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.859
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.855
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.828
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.808
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.855
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.828
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.838
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.810
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.859
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.800
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.838
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.805
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.828
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.838
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.859
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.855
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.828
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.808
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.859
OS03G0818800 Oryza sativa OS03G0818800 I 0.797
OS05G0121600 Oryza sativa OS05G0121600 I 0.838
OS07G0235800 Oryza sativa OS07G0235800 I 0.859
P93632_MAIZE Zea mays P93632_MAIZE D 0.787
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.856
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.778
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.838
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.838
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.864
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.794
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.834
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.838
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.830
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.830
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.817
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.838
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.822
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.839
PK02403.1 Cannabis sativa PK02403.1 I 0.830
PK07183.1 Cannabis sativa PK07183.1 I 0.838
PK14490.1 Cannabis sativa PK14490.1 I 0.689
Pm000974 Prunus mume Pm000974 I 0.834
Pm002492 Prunus mume Pm002492 I 0.837
Pm030172 Prunus mume Pm030172 I 0.814
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.833
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.833
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.830
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.817
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.695
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.837
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.814
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.837
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.819
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.831
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.819
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.832
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.837
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.830
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.842
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.864
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.856
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.828
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.785
Si012635m.g Setaria italica Si012635m.g I 0.828
Si025305m.g Setaria italica Si025305m.g I 0.838
Si029636m.g Setaria italica Si029636m.g I 0.856
Si036068m.g Setaria italica Si036068m.g I 0.864
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.825
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.830
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.831
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.813
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.834
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.689
TCM_000665 Theobroma cacao TCM_000665 I 0.833
TCM_022077 Theobroma cacao TCM_022077 I 0.837
TCM_042000 Theobroma cacao TCM_042000 I 0.833
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.790
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.836
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.687
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.833
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.833
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.833
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.702
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.838
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.830
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.837
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.849