Thhalv10000354m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10000354m.g T009874_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.783 0.960
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.782 0.920
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.782 0.920
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.781 0.900
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.781 0.900
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.773 0.940
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.773 0.940
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.773 0.940
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.773 0.940
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.727 0.900
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.727 0.900
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.695 0.840
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.695 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10000354m AP2 26 77

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28718.m000038 Ricinus communis 28718.m000038 I 0.767
30170.m013843 Ricinus communis 30170.m013843 I 0.759
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.761
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.759
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.704
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.704
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.720
Bo1g004940 Brassica oleracea Bo1g004940 I 0.779
Bo4g151460 Brassica oleracea Bo4g151460 I 0.783
Bo7g063980 Brassica oleracea Bo7g063980 I 0.782
Bo7g118430 Brassica oleracea Bo7g118430 I 0.783
Bo8g079660 Brassica oleracea Bo8g079660 I 0.782
Bo9g020380 Brassica oleracea Bo9g020380 I 0.776
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.782
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.740
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.783
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.717
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.744
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.783
Bra011744 Brassica rapa Bra011744 I 0.754
Bra012140 Brassica rapa Bra012140 I 0.760
Bra014056 Brassica rapa Bra014056 I 0.751
Bra017811 Brassica rapa Bra017811 I 0.783
Bra032173 Brassica rapa Bra032173 I 0.783
Bra036061 Brassica rapa Bra036061 I 0.782
Bra037124 Brassica rapa Bra037124 I 0.776
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.720
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.704
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.782
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.781
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.740
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.783
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.783
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.783
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.740
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.781
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.783
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.782
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.743
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.759
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.759
Ca_01556 Cicer arietinum Ca_01556 I 0.698
Ca_02170 Cicer arietinum Ca_02170 I 0.737
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.781
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.757
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.768
Cla014175 Citrullus lanatus Cla014175 I 0.722
Cla020550 Citrullus lanatus Cla020550 I 0.716
Cla020961 Citrullus lanatus Cla020961 I 0.751
Cla022937 Citrullus lanatus Cla022937 I 0.749
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.722
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.751
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.716
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.749
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.782
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.783
ERF008 Arabidopsis thaliana AT2G23340 D 0.773
ERF010 Arabidopsis thaliana AT5G67190 D 0.782
ERF011 Arabidopsis thaliana AT3G50260 D 0.781
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.749
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.751
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.751
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.768
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.745
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.769
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.739
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.749
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.738
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.749
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.739
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.751
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.736
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.751
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.768
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.738
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.768
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.751
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.738
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.737
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.704
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.763
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.704
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.747
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.730
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.739
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.690
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.744
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.733
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.719
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.742
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.742
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.739
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.700
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.779
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.704
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.720
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.726
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.761
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.759
MDP0000125673 Malus domestica MDP0000125673 I 0.769
MDP0000179962 Malus domestica MDP0000179962 I 0.769
MDP0000756341 Malus domestica MDP0000756341 I 0.726
mgf000289m Mimulus guttatus mgf000289m I 0.746
mgf006561m Mimulus guttatus mgf006561m I 0.759
mgf021115m Mimulus guttatus mgf021115m I 0.765
mgf025363m Mimulus guttatus mgf025363m I 0.733
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.705
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.739
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.698
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.737
OBART06G04460 Oryza barthii OBART06G04460 I 0.720
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.704
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.720
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.704
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.704
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.720
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.720
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.768
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.757
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.704
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.720
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.720
OS04G0648900 Oryza sativa OS04G0648900 I 0.704
OS06G0166400 Oryza sativa OS06G0166400 I 0.720
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.704
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.720
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.704
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.720
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.764
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.746
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.729
PK15612.1 Cannabis sativa PK15612.1 I 0.740
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.759
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.743
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.743
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.759
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.726
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.767
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.695
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.783
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.727
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.697
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.783
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.727
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.761
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.759
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.743
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.728
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.728
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.759
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.704
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.720
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.746
TCM_000669 Theobroma cacao TCM_000669 I 0.768
TCM_033791 Theobroma cacao TCM_033791 I 0.749
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.782
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.783
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.719
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.705
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.738
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.785