Thhalv10009402m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10009402m.g T009910_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF023
M06560_2.00
Arabidopsis thaliana
DYCACCGACANHDNN

NNHDNTGTCGGTGRH
Dap-seq
OMalley et al.(2016)
AT1G01250_col_a
0.822 0.980
ERF023
M06561_2.00
Arabidopsis thaliana
HHNHHDHCACCGACA

TGTCGGTGDHDDNDD
Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a
0.822 0.980
estExt_fgenesh1_pg.C_4800009
M01639_2.00
Physcomitrella patens
MACCGACM

KGTCGGTK
PBM
Weirauch et al.(2014)
pTH8488
0.682 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10009402m AP2 38 89

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
XP_002493922.1 Pichia pastoris XP_002493922.1 I 0.000
PAS_chr4_0487 Komagataella pastoris PAS_chr4_0487 I 0.000
NDAI_0D03240 Naumovozyma dairenensis NDAI_0D03240 I 0.000
KUCA_T00002767001 Kuraishia capsulata KUCA_T00002767001 I 0.000
KNAG_0M00350 Kazachstania naganishii KNAG_0M00350 I 0.000
KLLA0_F13046g Kluyveromyces lactis KLLA0_F13046g I 0.000
Kpol_529p13 Vanderwaltozyma polyspora Kpol_529p13 N 0.000
SAKL0H12958g Lachancea kluyveri SAKL0H12958g N 0.000
Scas_Contig721.92 Saccharomyces castellii Scas_Contig721.92 N 0.000
ZYRO0A09416g Zygosaccharomyces rouxii ZYRO0A09416g N 0.000
ZBAI_09618 Zygosaccharomyces bailii ZBAI_09618 N 0.000
ZBAI_01684 Zygosaccharomyces bailii ZBAI_01684 N 0.000
TPHA_0C02160 Tetrapisispora phaffii TPHA_0C02160 N 0.000
TDEL_0F05500 Torulaspora delbrueckii TDEL_0F05500 N 0.000
AGOS_AGR172W Ashbya gossypii AGOS_AGR172W N 0.000
HPODL_00650 Ogataea parapolymorpha HPODL_00650 N 0.000
NCAS_0B02840 Naumovozyma castellii NCAS_0B02840 N 0.000
AACERI_AaceriAGR172W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGR172W N 0.000