CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10016626m.g
(
Eutrema salsugineum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Thhalv10016626m.g
T009948_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD
HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.855
0.990
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.837
0.949
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.823
0.939
P93632_MAIZE
M09712_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.791
0.827
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10016626m
AP2
148
197
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
Thhalv10016626m
AP2
240
291
SKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAINSNGR
Thhalv10016653m
AP2
148
197
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
Thhalv10016653m
AP2
240
287
SKYRGVTLHKCGRWEARMGQFLGKKAYDKAAINSNGREAVTNFELSSY
Thhalv10016657m
AP2
148
197
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
Thhalv10016657m
AP2
240
287
SKYRGVTLHKCGRWEARMGQFLGKKAYDKAAINSNGREAVTNFELSSY
Links
Other
AP2
family TFs
Other
Eutrema salsugineum
TFs
253 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10025387m.g
Capsella rubella
Carubv10025387m.g
I
0.855
RAP2.7
Arabidopsis thaliana
AT2G28550
D
0.855
Cagra.1809s0003
Capsella grandiflora
Cagra.1809s0003
I
0.855
Bo4g070350
Brassica oleracea
Bo4g070350
I
0.851
Bra011939
Brassica rapa
Bra011939
I
0.851
MTR_4g061200
Medicago truncatula
MTR_4g061200
I
0.847
LjSGA_005424.1
Lotus japonicus
LjSGA_005424.1
I
0.845
Ca_02499
Cicer arietinum
Ca_02499
I
0.844
RAP2.7
Vitis vinifera
VIT_06s0004g03590
I
0.844
PGSC0003DMG400025390
Solanum tuberosum
PGSC0003DMG400025390
I
0.844
AMTR_s00035p00205430
Amborella trichopoda
AMTR_s00035p00205430
I
0.844
ORGLA05G0015400
Oryza glaberrima
ORGLA05G0015400
I
0.844
GLYMA12G07800
Glycine max
GLYMA12G07800
I
0.844
GLYMA13G40470
Glycine max
GLYMA13G40470
I
0.844
OPUNC05G01480
Oryza punctata
OPUNC05G01480
I
0.844
OS05G0121600
Oryza sativa
OS05G0121600
I
0.844
cassava24954.valid.m1
Manihot esculenta
cassava24954.valid.m1
I
0.844
Pavir.J11433
Panicum virgatum
Pavir.J11433
I
0.844
Pavir.J23348
Panicum virgatum
Pavir.J23348
I
0.844
chr3.LjT05P05.30.nd
Lotus japonicus
chr3.LjT05P05.30.nd
I
0.844
PDK_20s1506731g001
Phoenix dactylifera
PDK_20s1506731g001
I
0.844
orange1.1g010454m.g
Citrus sinensis
orange1.1g010454m.g
I
0.844
Eucgr.J02113
Eucalyptus grandis
Eucgr.J02113
I
0.844
cassava13566.valid.m1
Manihot esculenta
cassava13566.valid.m1
I
0.844
GLYMA11G15650
Glycine max
GLYMA11G15650
I
0.844
Aquca_027_00133
Aquilegia coerulea
Aquca_027_00133
I
0.844
28752.m000339
Ricinus communis
28752.m000339
I
0.844
Si025305m.g
Setaria italica
Si025305m.g
I
0.844
BGIOSGA018911
Oryza indica
BGIOSGA018911
I
0.844
VIT_08s0040g03180
Vitis vinifera
VIT_08s0040g03180
I
0.843
SapurV1A.0247s0170
Salix purpurea
SapurV1A.0247s0170
I
0.843
PGSC0003DMG400027904
Solanum tuberosum
PGSC0003DMG400027904
I
0.843
Pm002492
Prunus mume
Pm002492
I
0.843
GSMUA_Achr10G03230_001
Musa acuminata
GSMUA_Achr10G03230_001
I
0.843
Gorai.002G251500
Gossypium raimondii
Gorai.002G251500
I
0.843
TCM_022077
Theobroma cacao
TCM_022077
I
0.843
PRUPE_ppa005230mg
Prunus persica
PRUPE_ppa005230mg
I
0.843
POPTR_0016s08530
Populus trichocarpa
POPTR_0016s08530
I
0.843
MDP0000200319
Malus domestica
MDP0000200319
I
0.843
GSMUA_Achr9G03060_001
Musa acuminata
GSMUA_Achr9G03060_001
I
0.843
Ca_14618
Cicer arietinum
Ca_14618
I
0.842
GSMUA_Achr6G33140_001
Musa acuminata
GSMUA_Achr6G33140_001
I
0.841
MTR_2g093060
Medicago truncatula
MTR_2g093060
I
0.841
Cucsa.367290
Cucumis sativus
Cucsa.367290
I
0.841
VIT_13s0019g03550
Vitis vinifera
VIT_13s0019g03550
I
0.841
PK07183.1
Cannabis sativa
PK07183.1
I
0.841
LjT39B13.80.nc
Lotus japonicus
LjT39B13.80.nc
I
0.841
GLYMA03G33470
Glycine max
GLYMA03G33470
I
0.841
GSMUA_Achr6G34420_001
Musa acuminata
GSMUA_Achr6G34420_001
I
0.840
GSMUA_AchrUn_randomG10320_001
Musa acuminata
GSMUA_AchrUn_randomG10320_001
I
0.840
POPTR_0006s13460
Populus trichocarpa
POPTR_0006s13460
I
0.839
SapurV1A.0209s0320
Salix purpurea
SapurV1A.0209s0320
I
0.839
MLOC_43575
Hordeum vulgare
MLOC_43575
I
0.839
Pm000974
Prunus mume
Pm000974
I
0.839
GRMZM2G700665
Zea mays
GRMZM2G700665
I
0.839
Ciclev10028259m.g
Citrus clementina
Ciclev10028259m.g
I
0.839
MDP0000181606
Malus domestica
MDP0000181606
I
0.839
OMERI07G06850
Oryza meridionalis
OMERI07G06850
I
0.838
OBART07G08110
Oryza barthii
OBART07G08110
I
0.838
ONIVA03G25220
Oryza nivara
ONIVA03G25220
I
0.838
TCM_042000
Theobroma cacao
TCM_042000
I
0.838
Traes_1DS_2BB06F54C
Triticum aestivum
Traes_1DS_2BB06F54C
I
0.838
Traes_1AS_90F3120F8
Triticum aestivum
Traes_1AS_90F3120F8
I
0.838
BRADI2G37800
Brachypodium distachyon
BRADI2G37800
I
0.838
Traes_1BS_E68807072
Triticum aestivum
Traes_1BS_E68807072
I
0.838
OLONG_021321
Oryza longistaminata
OLONG_021321
I
0.838
OGLUM07G07330
Oryza glumaepatula
OGLUM07G07330
I
0.838
BGIOSGA025426
Oryza indica
BGIOSGA025426
I
0.838
Gorai.004G002100
Gossypium raimondii
Gorai.004G002100
I
0.838
F775_32962
Aegilops tauschii
F775_32962
I
0.838
Cucsa.307230
Cucumis sativus
Cucsa.307230
I
0.838
OPUNC07G07690
Oryza punctata
OPUNC07G07690
I
0.838
OS07G0235800
Oryza sativa
OS07G0235800
I
0.838
ORGLA07G0068600
Oryza glaberrima
ORGLA07G0068600
I
0.838
Cla018124
Citrullus lanatus
Cla018124
I
0.838
ORUFI07G08180
Oryza rufipogon
ORUFI07G08180
I
0.838
Solyc10g084340.1
Solanum lycopersicum
Solyc10g084340.1
I
0.837
PGSC0003DMG400025479
Solanum tuberosum
PGSC0003DMG400025479
I
0.837
AP2
Arabidopsis thaliana
AT4G36920
I
0.837
Solyc03g044300.2
Solanum lycopersicum
Solyc03g044300.2
I
0.837
AP2
Arabidopsis lyrata
fgenesh2_kg.7__332__AT4G36920.1
I
0.837
Bra017809
Brassica rapa
Bra017809
I
0.837
Q9XHD4_PETHY
Petunia x hybrida
Q9XHD4_PETHY
D
0.837
Bo1g004960
Brassica oleracea
Bo1g004960
I
0.837
Bostr.7867s1579
Boechera stricta
Bostr.7867s1579
I
0.837
Bra011741
Brassica rapa
Bra011741
I
0.837
29805.m001494
Ricinus communis
29805.m001494
I
0.837
Bo7g118400
Brassica oleracea
Bo7g118400
I
0.837
Cagra.4909s0048
Capsella grandiflora
Cagra.4909s0048
I
0.837
Ca_09295
Cicer arietinum
Ca_09295
I
0.837
GSMUA_Achr1G09830_001
Musa acuminata
GSMUA_Achr1G09830_001
I
0.837
Carubv10004818m.g
Capsella rubella
Carubv10004818m.g
I
0.837
MTR_4g094868
Medicago truncatula
MTR_4g094868
I
0.837
BRADI1G53650
Brachypodium distachyon
BRADI1G53650
I
0.836
POPTR_0007s10780
Populus trichocarpa
POPTR_0007s10780
I
0.836
Cla000716
Citrullus lanatus
Cla000716
I
0.836
evm.TU.supercontig_55.116
Carica papaya
evm.TU.supercontig_55.116
I
0.836
Gorai.003G025900
Gossypium raimondii
Gorai.003G025900
I
0.836
Pavir.J23520
Panicum virgatum
Pavir.J23520
I
0.836
Pavir.J41060
Panicum virgatum
Pavir.J41060
I
0.836
Cucsa.102550
Cucumis sativus
Cucsa.102550
I
0.836
SapurV1A.0689s0070
Salix purpurea
SapurV1A.0689s0070
I
0.836
Si036068m.g
Setaria italica
Si036068m.g
I
0.836
Solyc02g093150.2
Solanum lycopersicum
Solyc02g093150.2
I
0.836
TOE3
Vitis vinifera
VIT_07s0031g00220
I
0.836
PGSC0003DMG400006482
Solanum tuberosum
PGSC0003DMG400006482
I
0.836
Sb01g003400
Sorghum bicolor
Sb01g003400
I
0.836
PK02403.1
Cannabis sativa
PK02403.1
I
0.836
GSMUA_Achr1G26080_001
Musa acuminata
GSMUA_Achr1G26080_001
I
0.836
GLYMA01G39520
Glycine max
GLYMA01G39520
I
0.836
GLYMA17G18640
Glycine max
GLYMA17G18640
I
0.836
GSMUA_Achr3G13180_001
Musa acuminata
GSMUA_Achr3G13180_001
I
0.836
GRMZM5G862109
Zea mays
GRMZM5G862109
I
0.836
GLYMA05G18041
Glycine max
GLYMA05G18041
I
0.836
MTR_5g016810
Medicago truncatula
MTR_5g016810
I
0.836
PGSC0003DMG400004006
Solanum tuberosum
PGSC0003DMG400004006
I
0.836
GSMUA_AchrUn_randomG16200_001
Musa acuminata
GSMUA_AchrUn_randomG16200_001
I
0.835
chr1.CM0033.300.nc
Lotus japonicus
chr1.CM0033.300.nc
I
0.835
mgf009315m
Mimulus guttatus
mgf009315m
I
0.835
mgf021945m
Mimulus guttatus
mgf021945m
I
0.835
Pavir.Ba03394
Panicum virgatum
Pavir.Ba03394
I
0.834
GRMZM2G176175
Zea mays
GRMZM2G176175
I
0.834
Aquca_010_00628
Aquilegia coerulea
Aquca_010_00628
I
0.834
Si029636m.g
Setaria italica
Si029636m.g
I
0.834
OGLUM03G38790
Oryza glumaepatula
OGLUM03G38790
I
0.834
OMERI03G35820
Oryza meridionalis
OMERI03G35820
I
0.834
ONIVA03G40610
Oryza nivara
ONIVA03G40610
I
0.834
OPUNC03G36030
Oryza punctata
OPUNC03G36030
I
0.834
BGIOSGA013826
Oryza indica
BGIOSGA013826
I
0.834
Sb02g007000
Sorghum bicolor
Sb02g007000
I
0.834
ORUFI03G40640
Oryza rufipogon
ORUFI03G40640
I
0.834
TCM_000665
Theobroma cacao
TCM_000665
I
0.833
Gorai.008G077800
Gossypium raimondii
Gorai.008G077800
I
0.833
Gorai.007G215900
Gossypium raimondii
Gorai.007G215900
I
0.833
SapurV1A.1340s0010
Salix purpurea
SapurV1A.1340s0010
I
0.831
GSMUA_Achr8G18550_001
Musa acuminata
GSMUA_Achr8G18550_001
I
0.831
Aquca_007_00714
Aquilegia coerulea
Aquca_007_00714
I
0.831
Lus10023165.g
Linum usitatissimum
Lus10023165.g
I
0.831
Solyc02g064960.2
Solanum lycopersicum
Solyc02g064960.2
I
0.830
OGLUM04G27380
Oryza glumaepatula
OGLUM04G27380
I
0.828
POPTR_0005s18400
Populus trichocarpa
POPTR_0005s18400
I
0.828
GRMZM2G174784
Zea mays
GRMZM2G174784
I
0.828
BGIOSGA017250
Oryza indica
BGIOSGA017250
I
0.828
ORUFI04G29120
Oryza rufipogon
ORUFI04G29120
I
0.828
ORGLA04G0237800
Oryza glaberrima
ORGLA04G0237800
I
0.828
Si012635m.g
Setaria italica
Si012635m.g
I
0.828
OMERI04G22900
Oryza meridionalis
OMERI04G22900
I
0.828
Sb06g030670
Sorghum bicolor
Sb06g030670
I
0.828
OPUNC04G24930
Oryza punctata
OPUNC04G24930
I
0.828
ONIVA04G25920
Oryza nivara
ONIVA04G25920
I
0.828
BRADI5G24100
Brachypodium distachyon
BRADI5G24100
I
0.827
GSMUA_Achr5G29290_001
Musa acuminata
GSMUA_Achr5G29290_001
I
0.827
Gorai.009G104200
Gossypium raimondii
Gorai.009G104200
I
0.827
GSMUA_Achr8G01980_001
Musa acuminata
GSMUA_Achr8G01980_001
I
0.827
Cucsa.051660
Cucumis sativus
Cucsa.051660
I
0.827
Lus10019331.g
Linum usitatissimum
Lus10019331.g
I
0.826
POPTR_0008s04490
Populus trichocarpa
POPTR_0008s04490
I
0.826
Lus10009374.g
Linum usitatissimum
Lus10009374.g
I
0.826
Lus10018124.g
Linum usitatissimum
Lus10018124.g
I
0.826
cassava12358.valid.m1
Manihot esculenta
cassava12358.valid.m1
I
0.825
29169.m000017
Ricinus communis
29169.m000017
I
0.825
OB03G45870
Oryza brachyantha
OB03G45870
I
0.825
mgf010466m
Mimulus guttatus
mgf010466m
I
0.825
mgf005133m
Mimulus guttatus
mgf005133m
I
0.825
GSMUA_Achr3G28340_001
Musa acuminata
GSMUA_Achr3G28340_001
I
0.825
MTR_7g100590
Medicago truncatula
MTR_7g100590
I
0.824
Ca_12010
Cicer arietinum
Ca_12010
I
0.824
Q9XHD3_PETHY
Petunia x hybrida
Q9XHD3_PETHY
D
0.823
GSMUA_Achr4G06100_001
Musa acuminata
GSMUA_Achr4G06100_001
I
0.822
Solyc06g075510.2
Solanum lycopersicum
Solyc06g075510.2
I
0.822
Eucgr.B02453
Eucalyptus grandis
Eucgr.B02453
I
0.822
GSMUA_Achr11G23870_001
Musa acuminata
GSMUA_Achr11G23870_001
I
0.822
cassava2301.valid.m1
Manihot esculenta
cassava2301.valid.m1
I
0.822
PGSC0003DMG400011046
Solanum tuberosum
PGSC0003DMG400011046
I
0.821
GSMUA_Achr9G04270_001
Musa acuminata
GSMUA_Achr9G04270_001
I
0.821
evm.TU.supercontig_114.55
Carica papaya
evm.TU.supercontig_114.55
I
0.821
MDP0000137561
Malus domestica
MDP0000137561
I
0.820
gene23876-v1.0-hybrid
Fragaria vesca
gene23876-v1.0-hybrid
I
0.819
Eucgr.I00892
Eucalyptus grandis
Eucgr.I00892
I
0.819
PRUPE_ppa003783mg
Prunus persica
PRUPE_ppa003783mg
I
0.819
Pm030172
Prunus mume
Pm030172
I
0.819
GLYMA19G36200
Glycine max
GLYMA19G36200
I
0.819
SapurV1A.0038s0220
Salix purpurea
SapurV1A.0038s0220
I
0.818
OPUNC06G19990
Oryza punctata
OPUNC06G19990
I
0.816
Gorai.011G106200
Gossypium raimondii
Gorai.011G106200
I
0.816
Lus10019905.g
Linum usitatissimum
Lus10019905.g
I
0.816
GLYMA15G04930
Glycine max
GLYMA15G04930
I
0.816
Lus10026477.g
Linum usitatissimum
Lus10026477.g
I
0.816
Ciclev10031306m.g
Citrus clementina
Ciclev10031306m.g
I
0.814
ORUFI06G23930
Oryza rufipogon
ORUFI06G23930
I
0.814
BGIOSGA020813
Oryza indica
BGIOSGA020813
I
0.814
orange1.1g010763m.g
Citrus sinensis
orange1.1g010763m.g
I
0.814
OMERI06G22190
Oryza meridionalis
OMERI06G22190
I
0.814
LPERR06G18460
Leersia perrieri
LPERR06G18460
I
0.814
OB06G29960
Oryza brachyantha
OB06G29960
I
0.814
OGLUM06G23380
Oryza glumaepatula
OGLUM06G23380
I
0.814
ONIVA06G26190
Oryza nivara
ONIVA06G26190
I
0.814
Pavir.J37968
Panicum virgatum
Pavir.J37968
I
0.813
GSMUA_Achr5G07270_001
Musa acuminata
GSMUA_Achr5G07270_001
I
0.812
GRMZM2G416701
Zea mays
GRMZM2G416701
I
0.809
Lus10015055.g
Linum usitatissimum
Lus10015055.g
I
0.806
MDP0000163645
Malus domestica
MDP0000163645
I
0.805
AMTR_s00058p00216470
Amborella trichopoda
AMTR_s00058p00216470
I
0.805
Bo7g064000
Brassica oleracea
Bo7g064000
I
0.804
Bra012139
Brassica rapa
Bra012139
I
0.804
Pavir.J27340
Panicum virgatum
Pavir.J27340
I
0.800
GSMUA_Achr8G21030_001
Musa acuminata
GSMUA_Achr8G21030_001
I
0.800
evm.TU.supercontig_139.43
Carica papaya
evm.TU.supercontig_139.43
I
0.800
orange1.1g009943m.g
Citrus sinensis
orange1.1g009943m.g
I
0.799
Ciclev10025364m.g
Citrus clementina
Ciclev10025364m.g
I
0.799
Lus10004990.g
Linum usitatissimum
Lus10004990.g
I
0.798
cassava13884.valid.m1
Manihot esculenta
cassava13884.valid.m1
I
0.796
Thhalv10004742m.g
Eutrema salsugineum
Thhalv10004742m.g
I
0.795
Cla020549
Citrullus lanatus
Cla020549
I
0.795
Lus10036141.g
Linum usitatissimum
Lus10036141.g
I
0.793
MLOC_43041
Hordeum vulgare
MLOC_43041
I
0.792
BRADI1G30337
Brachypodium distachyon
BRADI1G30337
I
0.792
OS03G0818800
Oryza sativa
OS03G0818800
I
0.792
GRMZM2G160730
Zea mays
GRMZM2G160730
I
0.791
Sb10g025053
Sorghum bicolor
Sb10g025053
I
0.791
P93632_MAIZE
Zea mays
P93632_MAIZE
D
0.791
Lus10041595.g
Linum usitatissimum
Lus10041595.g
I
0.789
gene25394-v1.0-hybrid
Fragaria vesca
gene25394-v1.0-hybrid
I
0.786
Carubv10026667m.g
Capsella rubella
Carubv10026667m.g
I
0.785
Bostr.0568s0140
Boechera stricta
Bostr.0568s0140
I
0.785
TOE3
Arabidopsis thaliana
AT5G67180
I
0.785
TOE3
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002628
I
0.785
Cagra.0342s0004
Capsella grandiflora
Cagra.0342s0004
I
0.785
Pavir.Da00466
Panicum virgatum
Pavir.Da00466
I
0.784
Cucsa.065640
Cucumis sativus
Cucsa.065640
I
0.781
gene18102-v1.0-hybrid
Fragaria vesca
gene18102-v1.0-hybrid
I
0.781
LPERR05G01420
Leersia perrieri
LPERR05G01420
I
0.780
OLONG_026757
Oryza longistaminata
OLONG_026757
I
0.780
Cla018549
Citrullus lanatus
Cla018549
I
0.776
Ciclev10011588m.g
Citrus clementina
Ciclev10011588m.g
I
0.768
Bostr.27991s0069
Boechera stricta
Bostr.27991s0069
N
0.725
RAP2.7
Arabidopsis lyrata
fgenesh2_kg.4__825__AT2G28550.1
N
0.725
TCM_043051
Theobroma cacao
TCM_043051
N
0.705
Solyc09g007260.2
Solanum lycopersicum
Solyc09g007260.2
N
0.705
ORUFI05G01620
Oryza rufipogon
ORUFI05G01620
N
0.705
ONIVA05G01600
Oryza nivara
ONIVA05G01600
N
0.705
OMERI05G01620
Oryza meridionalis
OMERI05G01620
N
0.705
OGLUM05G01570
Oryza glumaepatula
OGLUM05G01570
N
0.705
Bo3g040110
Brassica oleracea
Bo3g040110
N
0.701
Traes_7DL_7B0ABD21E
Triticum aestivum
Traes_7DL_7B0ABD21E
I
0.701
Thhalv10025268m.g
Eutrema salsugineum
Thhalv10025268m.g
I
0.692
Solyc11g072600.1
Solanum lycopersicum
Solyc11g072600.1
I
0.689
PK14490.1
Cannabis sativa
PK14490.1
I
0.689
Cla013460
Citrullus lanatus
Cla013460
N
0.689
POPTR_0010s22320
Populus trichocarpa
POPTR_0010s22320
I
0.682
Si006371m.g
Setaria italica
Si006371m.g
I
0.681
Solyc04g049800.2
Solanum lycopersicum
Solyc04g049800.2
N
0.678