CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Thhalv10017614m.g
(
Eutrema salsugineum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Thhalv10017614m.g
T009955_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
abi4
M02648_2.00
Zea mays
CGSYGCYBYB
VRVRGCRSCG
SELEX
Mathelier et al.(2014)
MA0123.1
0.785
0.920
abi4
M09706_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABI4_01
0.785
0.920
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10017614m
AP2
57
108
FRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVFLYGS
Links
Other
AP2
family TFs
Other
Eutrema salsugineum
TFs
57 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy