Thhalv10019247m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10019247m.g T009963_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF069
M01604_2.00 		Arabidopsis thaliana
NNGCCGNNN
NNNCGGCNN		 PBM
Weirauch et al.(2014)
pTH7550 		0.768 0.830
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.752 0.736
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.736 0.717
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.730 0.698
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.730 0.698
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.730 0.698
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.693 0.642
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019247m AP2 79 134

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g094430 Brassica oleracea Bo6g094430 I 0.871
Bo2g070850 Brassica oleracea Bo2g070850 I 0.871
Bra003936 Brassica rapa Bra003936 I 0.871
Bra007963 Brassica rapa Bra007963 I 0.871
fgenesh2_kg.1__2503__AT1G22985.1 Arabidopsis lyrata fgenesh2_kg.1__2503__AT1G22985.1 I 0.853
Bo8g071630 Brassica oleracea Bo8g071630 I 0.836
Thhalv10008928m.g Eutrema salsugineum Thhalv10008928m.g I 0.810
Bostr.12659s0155 Boechera stricta Bostr.12659s0155 I 0.793
ERF070 Arabidopsis thaliana AT1G71130 N 0.773
fgenesh2_kg.2__1375__AT1G71130.1 Arabidopsis lyrata fgenesh2_kg.2__1375__AT1G71130.1 N 0.772
Bo7g056530 Brassica oleracea Bo7g056530 I 0.768
ERF069 Arabidopsis thaliana AT1G22985 D 0.768
CRF2 Arabidopsis lyrata fgenesh2_kg.7__1924__AT4G23750.1 I 0.763
CRF2 Arabidopsis thaliana AT4G23750 D 0.763
Bostr.7867s0178 Boechera stricta Bostr.7867s0178 I 0.763
Carubv10005160m.g Capsella rubella Carubv10005160m.g I 0.763
Cagra.1226s0039 Capsella grandiflora Cagra.1226s0039 I 0.763
Cucsa.107190 Cucumis sativus Cucsa.107190 I 0.762
Cla011108 Citrullus lanatus Cla011108 I 0.762
Lus10027573.g Linum usitatissimum Lus10027573.g I 0.759
Lus10039324.g Linum usitatissimum Lus10039324.g I 0.759
Carubv10010423m.g Capsella rubella Carubv10010423m.g I 0.757
Cagra.0114s0006 Capsella grandiflora Cagra.0114s0006 I 0.757
gene32028-v1.0-hybrid Fragaria vesca gene32028-v1.0-hybrid I 0.750
CRF1 Arabidopsis thaliana AT4G11140 I 0.747
Cla004291 Citrullus lanatus Cla004291 I 0.747
CRF1 Arabidopsis lyrata fgenesh2_kg.6__3086__AT4G11140.1 I 0.747
Cucsa.012850 Cucumis sativus Cucsa.012850 I 0.747
Bostr.25463s0212 Boechera stricta Bostr.25463s0212 I 0.746
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.746
Thhalv10029132m.g Eutrema salsugineum Thhalv10029132m.g I 0.746
Bo3g045150 Brassica oleracea Bo3g045150 I 0.746
MDP0000854039 Malus domestica MDP0000854039 I 0.744
Carubv10001539m.g Capsella rubella Carubv10001539m.g I 0.744
MDP0000308379 Malus domestica MDP0000308379 I 0.744
Lus10017550.g Linum usitatissimum Lus10017550.g I 0.743
AMTR_s00097p00165740 Amborella trichopoda AMTR_s00097p00165740 I 0.742
GLYMA01G43350 Glycine max GLYMA01G43350 I 0.739
Bostr.7867s0626 Boechera stricta Bostr.7867s0626 I 0.739
GLYMA11G02140 Glycine max GLYMA11G02140 I 0.739
GLYMA08G02460 Glycine max GLYMA08G02460 I 0.738
cassava46470.m1 Manihot esculenta cassava46470.m1 I 0.737
PK28823.1 Cannabis sativa PK28823.1 I 0.737
GLYMA06G13040 Glycine max GLYMA06G13040 I 0.737
gene13118-v1.0-hybrid Fragaria vesca gene13118-v1.0-hybrid I 0.737
GLYMA04G41740 Glycine max GLYMA04G41740 I 0.737
chr2.CM0060.150.nc Lotus japonicus chr2.CM0060.150.nc I 0.737
mgf018116m Mimulus guttatus mgf018116m I 0.737
Carubv10026682m.g Capsella rubella Carubv10026682m.g I 0.736
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.736
SapurV1A.1017s0070 Salix purpurea SapurV1A.1017s0070 I 0.736
POPTR_0015s06070 Populus trichocarpa POPTR_0015s06070 I 0.736
Bostr.26833s0952 Boechera stricta Bostr.26833s0952 I 0.736
CRF3 Arabidopsis lyrata scaffold_801806.1 I 0.736
CRF3 Arabidopsis thaliana AT5G53290 D 0.736
Cagra.0084s0074 Capsella grandiflora Cagra.0084s0074 I 0.736
MTR_3g090760 Medicago truncatula MTR_3g090760 I 0.735
VIT_16s0050g02400 Vitis vinifera VIT_16s0050g02400 I 0.735
Eucgr.K00321 Eucalyptus grandis Eucgr.K00321 I 0.735
Ca_03948 Cicer arietinum Ca_03948 I 0.735
PGSC0003DMG400002350 Solanum tuberosum PGSC0003DMG400002350 I 0.735
Gorai.008G271200 Gossypium raimondii Gorai.008G271200 I 0.735
Gorai.006G200400 Gossypium raimondii Gorai.006G200400 I 0.735
Solyc06g051840.1 Solanum lycopersicum Solyc06g051840.1 I 0.735
PGSC0003DMG400036493 Solanum tuberosum PGSC0003DMG400036493 I 0.735
Solyc03g007460.1 Solanum lycopersicum Solyc03g007460.1 I 0.735
TCM_015336 Theobroma cacao TCM_015336 I 0.735
cassava32471.m1 Manihot esculenta cassava32471.m1 I 0.735
Bra003068 Brassica rapa Bra003068 I 0.735
Thhalv10026857m.g Eutrema salsugineum Thhalv10026857m.g I 0.735
30169.m006542 Ricinus communis 30169.m006542 I 0.735
cassava7228.valid.m1 Manihot esculenta cassava7228.valid.m1 I 0.735
Bo9g111050 Brassica oleracea Bo9g111050 I 0.735
Thhalv10013898m.g Eutrema salsugineum Thhalv10013898m.g I 0.735
Bra022643 Brassica rapa Bra022643 I 0.735
Bo2g045930 Brassica oleracea Bo2g045930 I 0.735
PRUPE_ppa008720mg Prunus persica PRUPE_ppa008720mg I 0.734
Pm019793 Prunus mume Pm019793 I 0.734
Aquca_037_00045 Aquilegia coerulea Aquca_037_00045 I 0.733
mgf023807m Mimulus guttatus mgf023807m I 0.733
Ciclev10005220m.g Citrus clementina Ciclev10005220m.g I 0.732
orange1.1g047455m.g Citrus sinensis orange1.1g047455m.g I 0.732
CRF4 Arabidopsis thaliana AT4G27950 D 0.730
POPTR_0012s01260 Populus trichocarpa POPTR_0012s01260 I 0.730
Eucgr.A02669 Eucalyptus grandis Eucgr.A02669 I 0.730
Cagra.1225s0103 Capsella grandiflora Cagra.1225s0103 I 0.730
SapurV1A.1043s0120 Salix purpurea SapurV1A.1043s0120 I 0.730
Carubv10005229m.g Capsella rubella Carubv10005229m.g I 0.730
SapurV1A.1442s0010 Salix purpurea SapurV1A.1442s0010 I 0.730
SapurV1A.2151s0020 Salix purpurea SapurV1A.2151s0020 I 0.730
CRF4 Arabidopsis lyrata scaffold_701473.1 I 0.729
Cagra.16778s0005 Capsella grandiflora Cagra.16778s0005 I 0.728
Cucsa.118840 Cucumis sativus Cucsa.118840 I 0.728
Bo1g037170 Brassica oleracea Bo1g037170 I 0.727
Bra013730 Brassica rapa Bra013730 I 0.727
Bra019270 Brassica rapa Bra019270 I 0.727
Bo7g109100 Brassica oleracea Bo7g109100 I 0.727
TCM_005203 Theobroma cacao TCM_005203 I 0.726
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.726
Eucgr.E00834 Eucalyptus grandis Eucgr.E00834 I 0.725
SapurV1A.0215s0310 Salix purpurea SapurV1A.0215s0310 I 0.725
Ca_15671 Cicer arietinum Ca_15671 I 0.725
SapurV1A.4828s0010 Salix purpurea SapurV1A.4828s0010 I 0.725
POPTR_0019s15190 Populus trichocarpa POPTR_0019s15190 I 0.723
Lus10032353.g Linum usitatissimum Lus10032353.g I 0.722
Lus10033938.g Linum usitatissimum Lus10033938.g I 0.722
SapurV1A.1111s0070 Salix purpurea SapurV1A.1111s0070 I 0.722
GSMUA_Achr10G26480_001 Musa acuminata GSMUA_Achr10G26480_001 I 0.721
GLYMA02G40320 Glycine max GLYMA02G40320 I 0.720
mgf008137m Mimulus guttatus mgf008137m I 0.720
Gorai.001G156900 Gossypium raimondii Gorai.001G156900 I 0.720
CRF6 Arabidopsis thaliana AT3G61630 I 0.719
Thhalv10001561m.g Eutrema salsugineum Thhalv10001561m.g I 0.718
PK16787.1 Cannabis sativa PK16787.1 I 0.717
TCM_016396 Theobroma cacao TCM_016396 I 0.717
Cucsa.303720 Cucumis sativus Cucsa.303720 I 0.717
Bra029079 Brassica rapa Bra029079 I 0.717
VIT_06s0004g08190 Vitis vinifera VIT_06s0004g08190 I 0.717
GSMUA_Achr7G10720_001 Musa acuminata GSMUA_Achr7G10720_001 I 0.717
cassava39307.m1 Manihot esculenta cassava39307.m1 I 0.717
Cla011573 Citrullus lanatus Cla011573 I 0.717
POPTR_0001s10300 Populus trichocarpa POPTR_0001s10300 I 0.717
cassava12291.valid.m1 Manihot esculenta cassava12291.valid.m1 I 0.717
orange1.1g036154m.g Citrus sinensis orange1.1g036154m.g I 0.717
PRUPE_ppa025804mg Prunus persica PRUPE_ppa025804mg I 0.717
Gorai.004G135700 Gossypium raimondii Gorai.004G135700 I 0.717
Gorai.008G252300 Gossypium raimondii Gorai.008G252300 I 0.717
Pm024096 Prunus mume Pm024096 I 0.717
Ciclev10021073m.g Citrus clementina Ciclev10021073m.g I 0.717
Bo3g022760 Brassica oleracea Bo3g022760 I 0.717
MDP0000783818 Malus domestica MDP0000783818 I 0.717
MDP0000229285 Malus domestica MDP0000229285 I 0.717
Pm018418 Prunus mume Pm018418 I 0.716
evm.TU.supercontig_122.27 Carica papaya evm.TU.supercontig_122.27 I 0.716
cassava15416.m1 Manihot esculenta cassava15416.m1 I 0.716
28641.m000082 Ricinus communis 28641.m000082 I 0.715
gene18922-v1.0-hybrid Fragaria vesca gene18922-v1.0-hybrid I 0.715
TCM_042300 Theobroma cacao TCM_042300 I 0.715
Gorai.009G355700 Gossypium raimondii Gorai.009G355700 I 0.714
mgf022434m Mimulus guttatus mgf022434m I 0.714
mgf019903m Mimulus guttatus mgf019903m I 0.714
TCM_032408 Theobroma cacao TCM_032408 I 0.714
cassava27467.m1 Manihot esculenta cassava27467.m1 I 0.714
evm.TU.supercontig_2.277 Carica papaya evm.TU.supercontig_2.277 I 0.712
Gorai.003G082200 Gossypium raimondii Gorai.003G082200 I 0.712
Thhalv10023946m.g Eutrema salsugineum Thhalv10023946m.g I 0.712
Bra026295 Brassica rapa Bra026295 I 0.711
Bo1g051080 Brassica oleracea Bo1g051080 I 0.711
GSMUA_Achr7G14200_001 Musa acuminata GSMUA_Achr7G14200_001 I 0.711
CRF5 Arabidopsis lyrata fgenesh2_kg.4__2841__AT2G46310.1 I 0.710
CRF6 Arabidopsis lyrata fgenesh2_kg.5__2643__AT3G61630.1 I 0.710
SapurV1A.0237s0040 Salix purpurea SapurV1A.0237s0040 I 0.709
Thhalv10025693m.g Eutrema salsugineum Thhalv10025693m.g I 0.709
Bo8g053000 Brassica oleracea Bo8g053000 I 0.709
Bra010389 Brassica rapa Bra010389 I 0.709
GLYMA05G37120 Glycine max GLYMA05G37120 I 0.709
POPTR_0003s13610 Populus trichocarpa POPTR_0003s13610 I 0.709
30190.m010791 Ricinus communis 30190.m010791 I 0.709
Bostr.10273s0232 Boechera stricta Bostr.10273s0232 N 0.708
evm.TU.supercontig_3.43 Carica papaya evm.TU.supercontig_3.43 I 0.708
Bostr.25993s0138 Boechera stricta Bostr.25993s0138 I 0.708
Cagra.0050s0068 Capsella grandiflora Cagra.0050s0068 I 0.708
MTR_5g009620 Medicago truncatula MTR_5g009620 I 0.708
Carubv10023769m.g Capsella rubella Carubv10023769m.g I 0.708
Ca_06446 Cicer arietinum Ca_06446 I 0.707
Solyc08g081960.1 Solanum lycopersicum Solyc08g081960.1 I 0.706
PGSC0003DMG400012305 Solanum tuberosum PGSC0003DMG400012305 I 0.706
GLYMA03G23330 Glycine max GLYMA03G23330 I 0.706
Gorai.006G208200 Gossypium raimondii Gorai.006G208200 I 0.706
GLYMA13G08490 Glycine max GLYMA13G08490 I 0.705
GSMUA_Achr10G21940_001 Musa acuminata GSMUA_Achr10G21940_001 I 0.704
CRF5 Arabidopsis thaliana AT2G46310 I 0.704
LjSGA_027251.1 Lotus japonicus LjSGA_027251.1 I 0.703
GLYMA14G29040 Glycine max GLYMA14G29040 I 0.702
Ca_15022 Cicer arietinum Ca_15022 I 0.701
SapurV1A.0035s0790 Salix purpurea SapurV1A.0035s0790 I 0.701
Pavir.Eb00092 Panicum virgatum Pavir.Eb00092 I 0.699
Pavir.Ea00119 Panicum virgatum Pavir.Ea00119 I 0.699
Si002247m.g Setaria italica Si002247m.g I 0.699
cassava8409.m1 Manihot esculenta cassava8409.m1 I 0.698
Gorai.008G123400 Gossypium raimondii Gorai.008G123400 I 0.697
VIT_15s0046g01390 Vitis vinifera VIT_15s0046g01390 I 0.697
PGSC0003DMG400030472 Solanum tuberosum PGSC0003DMG400030472 I 0.697
Solyc06g082590.1 Solanum lycopersicum Solyc06g082590.1 I 0.696
GSMUA_Achr8G01690_001 Musa acuminata GSMUA_Achr8G01690_001 I 0.696
MTR_8g099215 Medicago truncatula MTR_8g099215 I 0.696
orange1.1g022553m.g Citrus sinensis orange1.1g022553m.g I 0.695
Ciclev10021422m.g Citrus clementina Ciclev10021422m.g I 0.695
MTR_4g086220 Medicago truncatula MTR_4g086220 I 0.694
GLYMA19G44240 Glycine max GLYMA19G44240 I 0.694
gene28067-v1.0-hybrid Fragaria vesca gene28067-v1.0-hybrid I 0.694
OS03G0815800 Oryza sativa OS03G0815800 I 0.693
Pavir.J19559 Panicum virgatum Pavir.J19559 I 0.693
OGLUM03G38530 Oryza glumaepatula OGLUM03G38530 I 0.693
ORUFI03G40350 Oryza rufipogon ORUFI03G40350 I 0.693
Ca_13084 Cicer arietinum Ca_13084 I 0.693
OMERI03G35630 Oryza meridionalis OMERI03G35630 I 0.693
BGIOSGA009571 Oryza indica BGIOSGA009571 I 0.693
ONIVA03G40360 Oryza nivara ONIVA03G40360 I 0.693
OBART03G38710 Oryza barthii OBART03G38710 I 0.693
Cla013632 Citrullus lanatus Cla013632 I 0.693
O65242_TOBAC Nicotiana tabacum O65242_TOBAC D 0.693
ORGLA03G0354400 Oryza glaberrima ORGLA03G0354400 I 0.693
SapurV1A.0013s0740 Salix purpurea SapurV1A.0013s0740 I 0.692
POPTR_0014s09020 Populus trichocarpa POPTR_0014s09020 I 0.692
Sb03g001296 Sorghum bicolor Sb03g001296 I 0.691
GRMZM2G142179 Zea mays GRMZM2G142179 I 0.691
GSMUA_Achr9G28840_001 Musa acuminata GSMUA_Achr9G28840_001 I 0.691
Cucsa.201950 Cucumis sativus Cucsa.201950 I 0.691
LPERR01G07340 Leersia perrieri LPERR01G07340 I 0.691
OPUNC03G35790 Oryza punctata OPUNC03G35790 I 0.690
TRAES3BF017100030CFD_g Triticum aestivum TRAES3BF017100030CFD_g I 0.690
MLOC_58641 Hordeum vulgare MLOC_58641 I 0.690
MDP0000190504 Malus domestica MDP0000190504 I 0.689
BRADI2G07357 Brachypodium distachyon BRADI2G07357 I 0.689
GSMUA_Achr10G01110_001 Musa acuminata GSMUA_Achr10G01110_001 I 0.688
GLYMA03G41640 Glycine max GLYMA03G41640 I 0.688
GSMUA_Achr6G14240_001 Musa acuminata GSMUA_Achr6G14240_001 I 0.688
GSMUA_Achr8G19850_001 Musa acuminata GSMUA_Achr8G19850_001 I 0.688
Cla004992 Citrullus lanatus Cla004992 I 0.688
OGLUM01G08910 Oryza glumaepatula OGLUM01G08910 I 0.687
OMERI01G07770 Oryza meridionalis OMERI01G07770 I 0.687
ORUFI01G08530 Oryza rufipogon ORUFI01G08530 I 0.687
OPUNC01G07600 Oryza punctata OPUNC01G07600 I 0.687
ONIVA01G10020 Oryza nivara ONIVA01G10020 I 0.687
OS01G0224100 Oryza sativa OS01G0224100 I 0.687
ORGLA01G0069400 Oryza glaberrima ORGLA01G0069400 I 0.687
MTR_4g086190 Medicago truncatula MTR_4g086190 I 0.686
Cla022096 Citrullus lanatus Cla022096 I 0.686
GRMZM2G044077 Zea mays GRMZM2G044077 I 0.686
MTR_4g086160 Medicago truncatula MTR_4g086160 I 0.686
mgf021650m Mimulus guttatus mgf021650m I 0.686
MTR_4g086165 Medicago truncatula MTR_4g086165 I 0.685
28049.m000300 Ricinus communis 28049.m000300 I 0.685
Ciclev10002183m.g Citrus clementina Ciclev10002183m.g I 0.684
Pm000232 Prunus mume Pm000232 I 0.684
PRUPE_ppa025495mg Prunus persica PRUPE_ppa025495mg I 0.684
PRUPE_ppa022995mg Prunus persica PRUPE_ppa022995mg I 0.684
evm.TU.supercontig_194.13 Carica papaya evm.TU.supercontig_194.13 I 0.684
SapurV1A.0099s0060 Salix purpurea SapurV1A.0099s0060 I 0.684
orange1.1g043400m.g Citrus sinensis orange1.1g043400m.g I 0.684
OGLUM01G29010 Oryza glumaepatula OGLUM01G29010 I 0.683
OBART01G25240 Oryza barthii OBART01G25240 I 0.683
ONIVA01G28490 Oryza nivara ONIVA01G28490 I 0.683
OMERI01G22970 Oryza meridionalis OMERI01G22970 I 0.683
BGIOSGA001090 Oryza indica BGIOSGA001090 I 0.683
OLONG_003671 Oryza longistaminata OLONG_003671 I 0.683
ORUFI01G28060 Oryza rufipogon ORUFI01G28060 I 0.683
OB01G34420 Oryza brachyantha OB01G34420 I 0.683
ORGLA01G0205500 Oryza glaberrima ORGLA01G0205500 I 0.683
OS01G0657400 Oryza sativa OS01G0657400 I 0.683
POPTR_0002s16900 Populus trichocarpa POPTR_0002s16900 I 0.682
Aquca_013_00161 Aquilegia coerulea Aquca_013_00161 I 0.682
Bo7g111760 Brassica oleracea Bo7g111760 I 0.680
GSMUA_Achr7G21980_001 Musa acuminata GSMUA_Achr7G21980_001 I 0.680
GSMUA_Achr7G18930_001 Musa acuminata GSMUA_Achr7G18930_001 I 0.679
Bra040839 Brassica rapa Bra040839 I 0.679
MDP0000890854 Malus domestica MDP0000890854 I 0.679
Bo4g009400 Brassica oleracea Bo4g009400 I 0.678
Bra004548 Brassica rapa Bra004548 I 0.678
Pavir.J00119 Panicum virgatum Pavir.J00119 I 0.678
Ciclev10028930m.g Citrus clementina Ciclev10028930m.g I 0.678
gw1.259.19.1 Physcomitrella patens gw1.259.19.1 I 0.677