Thhalv10019722m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10019722m.g T009969_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF119
M01093_2.00 		Arabidopsis thaliana
NNNGCCGNN
NNCGGCNNN		 PBM
Lambert et al.(2019)
pTH11551 		0.718 0.784
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.697 0.725
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.697 0.725
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.697 0.725
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019722m AP2 105 156

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10035018.g Linum usitatissimum Lus10035018.g N 0.737
Bo6g106990 Brassica oleracea Bo6g106990 N 0.734
Bra004318 Brassica rapa Bra004318 N 0.734
Bostr.26959s0035 Boechera stricta Bostr.26959s0035 I 0.730
Bra004033 Brassica rapa Bra004033 N 0.720
Bo6g096060 Brassica oleracea Bo6g096060 N 0.720
Lus10021678.g Linum usitatissimum Lus10021678.g I 0.719
ERF119 Arabidopsis thaliana AT3G25890 D 0.718
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.717
Bostr.0556s0264 Boechera stricta Bostr.0556s0264 I 0.716
Bra036360 Brassica rapa Bra036360 I 0.713
scaffold_500470.1 Arabidopsis lyrata scaffold_500470.1 I 0.712
Cagra.6197s0021 Capsella grandiflora Cagra.6197s0021 I 0.711
Thhalv10004526m.g Eutrema salsugineum Thhalv10004526m.g I 0.710
Bo7g082250 Brassica oleracea Bo7g082250 I 0.709
Bra025170 Brassica rapa Bra025170 I 0.709
Carubv10017565m.g Capsella rubella Carubv10017565m.g I 0.707
cassava43300.valid.m1 Manihot esculenta cassava43300.valid.m1 I 0.701
POPTR_0008s11900 Populus trichocarpa POPTR_0008s11900 I 0.701
27524.m000298 Ricinus communis 27524.m000298 I 0.701
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.701
SapurV1A.0078s0470 Salix purpurea SapurV1A.0078s0470 I 0.699
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.699
TCM_011811 Theobroma cacao TCM_011811 I 0.699
Bo2g060040 Brassica oleracea Bo2g060040 N 0.699
Bra033923 Brassica rapa Bra033923 N 0.699
POPTR_0010s13540 Populus trichocarpa POPTR_0010s13540 I 0.699
ERF118 Arabidopsis thaliana AT1G68550 D 0.697
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.692
cassava35757.valid.m1 Manihot esculenta cassava35757.valid.m1 I 0.692
Lus10034316.g Linum usitatissimum Lus10034316.g I 0.685
Lus10041456.g Linum usitatissimum Lus10041456.g N 0.683
Bo2g138790 Brassica oleracea Bo2g138790 I 0.680