Thhalv10021161m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10021161m.g T009972_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2A
M06655_2.00
Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN

NNNNDRWGKCGGTKDHDNNNN
Dap-seq
OMalley et al.(2016)
DREB2_col_a
0.768 0.939
DREB2A
M06656_2.00
Arabidopsis thaliana
NHNHMACCGMCWTWD

HWAWGKCGGTKDNDN
Dap-seq
OMalley et al.(2016)
DREB2_colamp_a
0.768 0.939
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.689 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10021161m AP2 76 127

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.774
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.774
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.774
DREB2A Arabidopsis thaliana AT5G05410 D 0.768
Bo1g141310 Brassica oleracea Bo1g141310 I 0.766
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.764
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.760
Bra034159 Brassica rapa Bra034159 I 0.756
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.754
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.754
Bra001386 Brassica rapa Bra001386 I 0.751
Bo3g063910 Brassica oleracea Bo3g063910 I 0.749
Bo2g006960 Brassica oleracea Bo2g006960 I 0.746
Bra028759 Brassica rapa Bra028759 I 0.746
Bra029889 Brassica rapa Bra029889 I 0.742
Bo5g136930 Brassica oleracea Bo5g136930 I 0.742
Bra005852 Brassica rapa Bra005852 I 0.741
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.735
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.711
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.707
DREB2B Arabidopsis thaliana AT3G11020 I 0.706
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.705
cassava46663.m1 Manihot esculenta cassava46663.m1 I 0.704
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.702
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.701
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.701
29729.m002292 Ricinus communis 29729.m002292 I 0.699
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.698
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.696
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.694
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.692
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.691
Bo9g177130 Brassica oleracea Bo9g177130 I 0.690
PK07402.1 Cannabis sativa PK07402.1 D 0.689
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.688
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.687
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.687
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.687
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.686
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.685
Cla006713 Citrullus lanatus Cla006713 I 0.684
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.684
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.682
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.682
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.681
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.680
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.679
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.678
MDP0000446783 Malus domestica MDP0000446783 I 0.678
MDP0000147009 Malus domestica MDP0000147009 I 0.678