Thhalv10023678m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10023678m.g T009981_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.719 0.980
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.682 0.878
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.682 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10023678m AP2 60 110

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm023766 Prunus mume Pm023766 I 0.758
PRUPE_ppa026499mg Prunus persica PRUPE_ppa026499mg I 0.758
VIT_16s0100g00400 Vitis vinifera VIT_16s0100g00400 I 0.750
Pm023768 Prunus mume Pm023768 N 0.741
PRUPE_ppa022712mg Prunus persica PRUPE_ppa022712mg N 0.741
Cucsa.041590 Cucumis sativus Cucsa.041590 N 0.739
POPTR_0001s08740 Populus trichocarpa POPTR_0001s08740 N 0.738
Pm023767 Prunus mume Pm023767 N 0.737
PRUPE_ppa021384mg Prunus persica PRUPE_ppa021384mg N 0.737
SapurV1A.0282s0060 Salix purpurea SapurV1A.0282s0060 N 0.737
MDP0000400129 Malus domestica MDP0000400129 N 0.736
gene32380-v1.0-hybrid Fragaria vesca gene32380-v1.0-hybrid N 0.731
chr2.CM0304.660.nd Lotus japonicus chr2.CM0304.660.nd N 0.730
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.719
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.710
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.710
GLYMA01G42510 Glycine max GLYMA01G42510 N 0.710
TCM_016176 Theobroma cacao TCM_016176 I 0.710
Cla011673 Citrullus lanatus Cla011673 I 0.705
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.704
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.704
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.704
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.704
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.701
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.700
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.699
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.699
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.699
GLYMA05G03540 Glycine max GLYMA05G03540 N 0.696
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.696
Bra027615 Brassica rapa Bra027615 I 0.693
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.693
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.693
Bra027616 Brassica rapa Bra027616 I 0.693
GLYMA17G14100 Glycine max GLYMA17G14100 N 0.690
Bo9g036590 Brassica oleracea Bo9g036590 I 0.682
30147.m014311 Ricinus communis 30147.m014311 I 0.682
ERF027 Arabidopsis thaliana AT1G12630 D 0.682
MDP0000262710 Malus domestica MDP0000262710 I 0.682
MDP0000189347 Malus domestica MDP0000189347 I 0.682
Bo9g028820 Brassica oleracea Bo9g028820 I 0.678
Cla004491 Citrullus lanatus Cla004491 I 0.677