Thhalv10023865m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10023865m.g T009982_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.840 0.980
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.787 0.843
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.787 0.843
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.787 0.843
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.787 0.843
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.787 0.843
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.787 0.843
DREB1E
M00963_2.00
Arabidopsis thaliana
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana
0.775 0.941
DREB1E
M06589_2.00
Arabidopsis thaliana
NNNYYGYCGACATVD

HBATGTCGRCRRNNN
Dap-seq
OMalley et al.(2016)
DDF2_col_a
0.775 0.941
DREB1E
M09702_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_03
0.775 0.941
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.681 0.765
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.681 0.765
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.681 0.765
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.681 0.765
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.678 0.765
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.678 0.765
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10023865m AP2 29 80

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.840
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.840
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.822
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.822
Bo5g016750 Brassica oleracea Bo5g016750 I 0.811
Bra027612 Brassica rapa Bra027612 I 0.797
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.787
DREB1F Arabidopsis thaliana AT1G12610 D 0.787
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.781
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.779
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.779
Bo8g108050 Brassica oleracea Bo8g108050 I 0.775
DREB1E Arabidopsis thaliana AT1G63030 D 0.775
Bra026963 Brassica rapa Bra026963 I 0.775
Bra016763 Brassica rapa Bra016763 I 0.774
Bo01335s010 Brassica oleracea Bo01335s010 I 0.774
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.768
30190.m011119 Ricinus communis 30190.m011119 I 0.748
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.748
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.744
Bra019777 Brassica rapa Bra019777 I 0.744
mgf017136m Mimulus guttatus mgf017136m I 0.741
mgf019061m Mimulus guttatus mgf019061m I 0.741
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.738
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.737
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.727
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.726
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.726
60638.m00016 Ricinus communis 60638.m00016 I 0.726
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.726
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.720
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.719
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.717
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.714
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.714
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.713
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.713
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.713
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.713
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.713
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.712
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.711
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.711
Cla011674 Citrullus lanatus Cla011674 I 0.710
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.707
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.706
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.706
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.705
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.705
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.705
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.704
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.704
mgf026642m Mimulus guttatus mgf026642m I 0.704
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.704
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.703
MDP0000154764 Malus domestica MDP0000154764 I 0.703
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.702
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.702
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.702
Pm023775 Prunus mume Pm023775 I 0.700
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.700
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.700
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.700
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.698
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.698
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.697
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.697
PK23332.1 Cannabis sativa PK23332.1 I 0.697
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.696
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.694
TCM_016175 Theobroma cacao TCM_016175 I 0.693
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.692
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.692
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.692
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.692
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.692
Pm023769 Prunus mume Pm023769 I 0.692
MDP0000198054 Malus domestica MDP0000198054 I 0.690
Cla006315 Citrullus lanatus Cla006315 I 0.690
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.688
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.686
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.686
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.685
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.685
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.685
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.685
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.682
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.682
Pm023772 Prunus mume Pm023772 I 0.682
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.682
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.682
DREB1A Arabidopsis thaliana AT4G25480 D 0.681
30190.m011120 Ricinus communis 30190.m011120 I 0.681
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.681
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.680
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.679
Bo9g104770 Brassica oleracea Bo9g104770 I 0.678
DREB1D Arabidopsis thaliana AT5G51990 D 0.678
Bra028290 Brassica rapa Bra028290 I 0.678
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.678
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.678
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.678
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.678
30147.m014313 Ricinus communis 30147.m014313 I 0.678
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.678