Q3HS42_BRANA (Brassica napus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Q3HS42_BRANA T010122_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q3HS42_BRANA
M09739_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII4_01
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q5MAR7_BRANA
M09742_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.780 0.980
Q3HS44_BRANA
M09741_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.780 0.980
Q3HS43_BRANA
M09740_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.780 0.980
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA

TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.764 0.940
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN

NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.764 0.920
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN

NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.764 0.920
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH

DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.764 0.920
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.694 0.880
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.694 0.880
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.684 0.880
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.681 0.840
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.681 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q3HS42_BRANA AP2 55 106

Links

Other AP2 family TFs
Other Brassica napus TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.780
Bo4g036220 Brassica oleracea Bo4g036220 I 0.780
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.780
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.780
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.780
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.780
Bra005314 Brassica rapa Bra005314 I 0.780
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.780
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.780
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.777
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.768
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.768
Bra040092 Brassica rapa Bra040092 I 0.764
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.764
ERF038 Arabidopsis thaliana AT2G35700 D 0.764
Bra012693 Brassica rapa Bra012693 I 0.764
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.764
ERF039 Arabidopsis thaliana AT4G16750 D 0.764
Bo1g053270 Brassica oleracea Bo1g053270 I 0.764
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.762
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.762
Bo7g104770 Brassica oleracea Bo7g104770 I 0.758
Ca_12765 Cicer arietinum Ca_12765 I 0.751
28353.m000054 Ricinus communis 28353.m000054 I 0.747
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.747
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.746
TCM_015930 Theobroma cacao TCM_015930 I 0.745
PK25970.1 Cannabis sativa PK25970.1 I 0.742
Cla005715 Citrullus lanatus Cla005715 I 0.742
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.742
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.741
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.741
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.741
Bo3g028500 Brassica oleracea Bo3g028500 I 0.741
Bra023026 Brassica rapa Bra023026 I 0.741
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.741
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.740
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.737
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.730
Pm023417 Prunus mume Pm023417 I 0.730
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.729
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.728
Bra017302 Brassica rapa Bra017302 I 0.705
GRMZM2G172936 Zea mays GRMZM2G172936 I 0.704
LPERR04G16900 Leersia perrieri LPERR04G16900 I 0.704
ORUFI02G28010 Oryza rufipogon ORUFI02G28010 I 0.702
ORGLA04G0179000 Oryza glaberrima ORGLA04G0179000 I 0.702
OPUNC04G18530 Oryza punctata OPUNC04G18530 I 0.702
OPUNC02G24230 Oryza punctata OPUNC02G24230 I 0.702
ORUFI04G22430 Oryza rufipogon ORUFI04G22430 I 0.702
OS04G0550200 Oryza sativa OS04G0550200 I 0.702
Si012254m.g Setaria italica Si012254m.g I 0.702
Traes_6DL_3019F176A Triticum aestivum Traes_6DL_3019F176A I 0.702
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.702
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.702
OS02G0657000 Oryza sativa OS02G0657000 I 0.702
ONIVA04G19090 Oryza nivara ONIVA04G19090 I 0.702
OGLUM04G20790 Oryza glumaepatula OGLUM04G20790 I 0.702
BGIOSGA016884 Oryza indica BGIOSGA016884 I 0.702
MLOC_3095 Hordeum vulgare MLOC_3095 I 0.702
Pavir.Ga01093 Panicum virgatum Pavir.Ga01093 I 0.702
OGLUM02G27070 Oryza glumaepatula OGLUM02G27070 I 0.702
OMERI02G25910 Oryza meridionalis OMERI02G25910 I 0.702
BRADI3G50630 Brachypodium distachyon BRADI3G50630 I 0.702
ONIVA02G28990 Oryza nivara ONIVA02G28990 I 0.702
Pavir.Gb01128 Panicum virgatum Pavir.Gb01128 I 0.702
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.702
OMERI04G17290 Oryza meridionalis OMERI04G17290 I 0.702
LPERR02G21590 Leersia perrieri LPERR02G21590 I 0.702
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.699
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.699
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.699
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.699
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.699
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.699
OS04G0549800 Oryza sativa OS04G0549800 I 0.699
OBART04G20820 Oryza barthii OBART04G20820 I 0.699
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.699
POPTR_0003s07700 Populus trichocarpa POPTR_0003s07700 I 0.698
GLYMA11G03790 Glycine max GLYMA11G03790 I 0.697
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.696
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.696
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.696
cassava17387.m1 Manihot esculenta cassava17387.m1 I 0.696
30174.m008790 Ricinus communis 30174.m008790 I 0.696
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.696
Pm017610 Prunus mume Pm017610 I 0.696
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.696
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.694
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.694
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.694
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.694
TCM_005639 Theobroma cacao TCM_005639 I 0.694
PK01156.1 Cannabis sativa PK01156.1 I 0.694
ERF034 Arabidopsis thaliana AT2G44940 D 0.694
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.694
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.694
Gorai.007G087100 Gossypium raimondii Gorai.007G087100 I 0.694
Bo4g184540 Brassica oleracea Bo4g184540 I 0.693
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.692
MDP0000174352 Malus domestica MDP0000174352 I 0.691
Pm013463 Prunus mume Pm013463 I 0.691
Ca_01908 Cicer arietinum Ca_01908 I 0.691
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.691
Ca_28185 Cicer arietinum Ca_28185 I 0.691
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.691
GRMZM5G816314 Zea mays GRMZM5G816314 I 0.690
Sb04g032940 Sorghum bicolor Sb04g032940 I 0.690
Si017865m.g Setaria italica Si017865m.g I 0.690
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.690
GRMZM2G072926 Zea mays GRMZM2G072926 I 0.690
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.690
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.689
TCM_014892 Theobroma cacao TCM_014892 I 0.688
Bra004878 Brassica rapa Bra004878 I 0.688
Bo4g195280 Brassica oleracea Bo4g195280 I 0.688
Bra040333 Brassica rapa Bra040333 I 0.688
Bo4g024220 Brassica oleracea Bo4g024220 I 0.688
GRMZM2G048621 Zea mays GRMZM2G048621 I 0.687
GRMZM2G041839 Zea mays GRMZM2G041839 I 0.687
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.686
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.686
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.686
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.686
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.686
Traes_2AL_43491B9E0 Triticum aestivum Traes_2AL_43491B9E0 I 0.685
F775_04501 Aegilops tauschii F775_04501 I 0.685
Traes_2BL_FC0F8A3DC Triticum aestivum Traes_2BL_FC0F8A3DC I 0.685
PRUPE_ppa011735mg Prunus persica PRUPE_ppa011735mg I 0.685
Traes_2DL_A336122501 Triticum aestivum Traes_2DL_A336122501 I 0.685
evm.TU.supercontig_40.39 Carica papaya evm.TU.supercontig_40.39 I 0.685
Cla004187 Citrullus lanatus Cla004187 I 0.685
Sb01g029065 Sorghum bicolor Sb01g029065 I 0.684
Q8LKX0_MAIZE Zea mays Q8LKX0_MAIZE D 0.684
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.684
Si039427m.g Setaria italica Si039427m.g I 0.684
GRMZM5G889719 Zea mays GRMZM5G889719 I 0.684
Pavir.Ia02208 Panicum virgatum Pavir.Ia02208 I 0.684
mgf022802m Mimulus guttatus mgf022802m I 0.683
MTR_7g046260 Medicago truncatula MTR_7g046260 I 0.682
Gorai.001G176500 Gossypium raimondii Gorai.001G176500 I 0.682
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.681
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.681
POPTR_0001s15550 Populus trichocarpa POPTR_0001s15550 I 0.681
ERF035 Arabidopsis thaliana AT3G60490 D 0.681
Traes_2BL_984787AC0 Triticum aestivum Traes_2BL_984787AC0 I 0.681
Traes_2AL_0F08552FB Triticum aestivum Traes_2AL_0F08552FB I 0.681
mgf024816m Mimulus guttatus mgf024816m I 0.681
SapurV1A.1528s0030 Salix purpurea SapurV1A.1528s0030 I 0.681
SapurV1A.1360s0120 Salix purpurea SapurV1A.1360s0120 I 0.680
SapurV1A.1087s0080 Salix purpurea SapurV1A.1087s0080 I 0.680
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.680
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.679
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.679
orange1.1g041119m.g Citrus sinensis orange1.1g041119m.g I 0.679
Ciclev10009138m.g Citrus clementina Ciclev10009138m.g I 0.679
VIT_11s0016g03350 Vitis vinifera VIT_11s0016g03350 I 0.679
Bo1g009990 Brassica oleracea Bo1g009990 I 0.678
Gorai.004G281600 Gossypium raimondii Gorai.004G281600 I 0.678
Bra011383 Brassica rapa Bra011383 I 0.678
Pavir.Ab02601 Panicum virgatum Pavir.Ab02601 I 0.678
LPERR10G14320 Leersia perrieri LPERR10G14320 I 0.678
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.677
MDP0000652413 Malus domestica MDP0000652413 I 0.677
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.677