Q6T3U0_BRANA (Brassica napus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Q6T3U0_BRANA T010126_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q6T3U0_BRANA
M09743_2.00		 Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.811 1.000
Q8W242_BRANA
M09747_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF_01 		0.707 0.900
Q8S2T2_BRANA
M09744_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF17_01 		0.707 0.900
A6N8P3_BRANA
M09738_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBI5_01 		0.707 0.900
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.705 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.703 0.860
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.703 0.860
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.703 0.860
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.699 0.880
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.699 0.880
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.696 0.860
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.696 0.860
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.696 0.860
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.696 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q6T3U0_BRANA AP2 49 100

Links

Other AP2 family TFs
Other Brassica napus TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g110320 Brassica oleracea Bo7g110320 I 0.811
Bra019162 Brassica rapa Bra019162 I 0.811
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.811
Bra022770 Brassica rapa Bra022770 I 0.808
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.742
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.731
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.725
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.722
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.719
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.709
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.709
30147.m014313 Ricinus communis 30147.m014313 I 0.709
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.709
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.709
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.709
A6N8P3_BRANA Brassica napus A6N8P3_BRANA D 0.707
Q8W242_BRANA Brassica napus Q8W242_BRANA D 0.707
Bra010461 Brassica rapa Bra010461 I 0.707
Bo8g050740 Brassica oleracea Bo8g050740 I 0.707
Q8S2T2_BRANA Brassica napus Q8S2T2_BRANA D 0.707
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.706
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.705
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.705
Bo3g024240 Brassica oleracea Bo3g024240 I 0.705
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.705
Cla006315 Citrullus lanatus Cla006315 I 0.704
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.703
DREB1C Arabidopsis thaliana AT4G25470 D 0.703
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.702
PK23332.1 Cannabis sativa PK23332.1 I 0.702
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.702
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.702
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.702
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.702
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.702
Bra028290 Brassica rapa Bra028290 I 0.699
Bo9g104770 Brassica oleracea Bo9g104770 I 0.699
DREB1D Arabidopsis thaliana AT5G51990 D 0.699
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.699
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.699
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.699
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.699
Cla002362 Citrullus lanatus Cla002362 I 0.699
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.699
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.697
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.697
mgf026642m Mimulus guttatus mgf026642m I 0.696
DREB1A Arabidopsis thaliana AT4G25480 D 0.696
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.696
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.690
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.687
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.686
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.685
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.685
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.685
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.685
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.684
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.680
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.680
mgf018934m Mimulus guttatus mgf018934m I 0.679
mgf016974m Mimulus guttatus mgf016974m I 0.679
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.679
mgf018631m Mimulus guttatus mgf018631m I 0.679
mgf022408m Mimulus guttatus mgf022408m I 0.679
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.679
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.678
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.678
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.678
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.678