Q8S2T3_BRANA (Brassica napus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Q8S2T3_BRANA T010128_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8S2T3_BRANA
M09745_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q6T3U0_BRANA
M09743_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.811 1.000
Q8W242_BRANA
M09747_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF_01
0.707 0.900
Q8S2T2_BRANA
M09744_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF17_01
0.707 0.900
A6N8P3_BRANA
M09738_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBI5_01
0.707 0.900
Q8S2T5_BRANA
M09746_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF5_01
0.705 0.940
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.703 0.860
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.703 0.860
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.703 0.860
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.699 0.880
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.699 0.880
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.696 0.860
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.696 0.860
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.696 0.860
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.696 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q8S2T3_BRANA AP2 49 100

Links

Other AP2 family TFs
Other Brassica napus TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_11712 Aegilops tauschii F775_11712 N 0.000
BRADI5G08167 Brachypodium distachyon BRADI5G08167 N 0.000
PK06349.1 Cannabis sativa PK06349.1 N 0.000
evm.TU.supercontig_43.77 Carica papaya evm.TU.supercontig_43.77 N 0.000
Ca_08511 Cicer arietinum Ca_08511 N 0.000
Ca_09562 Cicer arietinum Ca_09562 I 0.000
Ciclev10030636m.g Citrus clementina Ciclev10030636m.g N 0.000
orange1.1g044976m.g Citrus sinensis orange1.1g044976m.g N 0.000
Eucgr.H04623 Eucalyptus grandis Eucgr.H04623 N 0.000
GLYMA18G00840 Glycine max GLYMA18G00840 N 0.000
GLYMA05G28090 Glycine max GLYMA05G28090 N 0.000
Gorai.009G332200 Gossypium raimondii Gorai.009G332200 N 0.000
LPERR04G07320 Leersia perrieri LPERR04G07320 N 0.000
cassava42936.valid.m1 Manihot esculenta cassava42936.valid.m1 N 0.000
cassava6546.valid.m1 Manihot esculenta cassava6546.valid.m1 N 0.000
MTR_8g080800 Medicago truncatula MTR_8g080800 N 0.000
GSMUA_Achr9G01330_001 Musa acuminata GSMUA_Achr9G01330_001 N 0.000
OBART04G10490 Oryza barthii OBART04G10490 N 0.000
OB04G17680 Oryza brachyantha OB04G17680 N 0.000
ORGLA04G0075400 Oryza glaberrima ORGLA04G0075400 N 0.000
ORGLA02G0342600 Oryza glaberrima ORGLA02G0342600 N 0.000
OGLUM04G10170 Oryza glumaepatula OGLUM04G10170 N 0.000
BGIOSGA016274 Oryza indica BGIOSGA016274 N 0.000
OPUNC04G08570 Oryza punctata OPUNC04G08570 N 0.000
ORUFI04G11670 Oryza rufipogon ORUFI04G11670 N 0.000
OS04G0388500 Oryza sativa OS04G0388500 N 0.000
Pavir.Gb01963 Panicum virgatum Pavir.Gb01963 N 0.000
Pavir.Ga01952 Panicum virgatum Pavir.Ga01952 N 0.000
PDK_20s1550381g002 Phoenix dactylifera PDK_20s1550381g002 N 0.000
Pm007031 Prunus mume Pm007031 N 0.000
PRUPE_ppa000516mg Prunus persica PRUPE_ppa000516mg N 0.000
Si009249m.g Setaria italica Si009249m.g N 0.000
Solyc05g015650.2 Solanum lycopersicum Solyc05g015650.2 N 0.000
Sb06g013850 Sorghum bicolor Sb06g013850 N 0.000
TCM_008731 Theobroma cacao TCM_008731 N 0.000
Traes_7DS_7B303CBAF Triticum aestivum Traes_7DS_7B303CBAF N 0.000
Traes_2DL_474B433DF Triticum aestivum Traes_2DL_474B433DF N 0.000
Traes_2BS_AF4D5351B Triticum aestivum Traes_2BS_AF4D5351B N 0.000
Traes_2AS_AE392E835 Triticum aestivum Traes_2AS_AE392E835 N 0.000
Traes_2AL_773EA7A5A Triticum aestivum Traes_2AL_773EA7A5A N 0.000
TRIUR3_26386 Triticum urartu TRIUR3_26386 N 0.000
VIT_01s0010g03850 Vitis vinifera VIT_01s0010g03850 N 0.000
GRMZM2G143205 Zea mays GRMZM2G143205 N 0.000