CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Q8S2T5_BRANA
(
Brassica napus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Q8S2T5_BRANA
T010129_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q8S2T5_BRANA
M09746_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF5_01
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q8S2T3_BRANA
M09745_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.705
0.940
Q6T3U0_BRANA
M09743_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.705
0.940
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT
ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.696
0.880
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.696
0.880
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.696
0.880
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.693
0.900
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.693
0.900
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Q8S2T5_BRANA
AP2
48
99
PIYRGVRQRHSGKWVCEVREPNKKSRIWLGTFLTAEIAARAHDVAAIALRGK
Links
Other
AP2
family TFs
Other
Brassica napus
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy