chr1.CM0033.300.nc (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr1.CM0033.300.nc T010136_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.853 0.959
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.843 0.949
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.835 0.949
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.819 0.867
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0033.300.nc AP2 123 172
chr1.CM0033.300.nc AP2 215 266

Links

Other AP2 family TFs
Other Lotus japonicus TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000181606 Malus domestica MDP0000181606 I 0.862
Pm000974 Prunus mume Pm000974 I 0.862
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.862
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.860
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.860
TCM_022077 Theobroma cacao TCM_022077 I 0.858
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.858
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.858
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.858
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.858
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.858
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.858
Pm002492 Prunus mume Pm002492 I 0.858
MDP0000200319 Malus domestica MDP0000200319 I 0.858
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.858
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.858
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.857
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.857
OS05G0121600 Oryza sativa OS05G0121600 I 0.857
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.857
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.857
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.857
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.857
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.857
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.857
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.857
28752.m000339 Ricinus communis 28752.m000339 I 0.857
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.857
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.857
Ca_02499 Cicer arietinum Ca_02499 I 0.857
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.857
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.857
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.857
Si025305m.g Setaria italica Si025305m.g I 0.857
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.857
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.857
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.857
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.857
PK07183.1 Cannabis sativa PK07183.1 I 0.856
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.854
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.854
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.854
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.854
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.854
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.854
Cla000716 Citrullus lanatus Cla000716 I 0.854
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.854
PK02403.1 Cannabis sativa PK02403.1 I 0.854
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.854
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.854
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.854
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.854
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.854
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.854
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.854
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.854
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.854
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.854
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.854
29805.m001494 Ricinus communis 29805.m001494 I 0.853
Bra011741 Brassica rapa Bra011741 I 0.853
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.853
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.853
Cla018124 Citrullus lanatus Cla018124 I 0.853
Ca_09295 Cicer arietinum Ca_09295 I 0.853
Bo7g118400 Brassica oleracea Bo7g118400 I 0.853
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.853
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.853
Bo1g004960 Brassica oleracea Bo1g004960 I 0.853
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.853
AP2 Arabidopsis thaliana AT4G36920 I 0.853
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.853
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.853
mgf009315m Mimulus guttatus mgf009315m I 0.853
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.853
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.853
Bra017809 Brassica rapa Bra017809 I 0.853
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.853
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.852
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.852
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.852
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.852
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.852
F775_32962 Aegilops tauschii F775_32962 I 0.852
TCM_042000 Theobroma cacao TCM_042000 I 0.852
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.852
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.852
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.852
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.851
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.851
mgf021945m Mimulus guttatus mgf021945m I 0.851
TCM_000665 Theobroma cacao TCM_000665 I 0.851
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.849
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.848
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.846
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.846
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.846
Si012635m.g Setaria italica Si012635m.g I 0.846
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.846
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.846
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.846
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.846
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.846
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.846
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.846
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.845
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.844
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.844
OB06G29960 Oryza brachyantha OB06G29960 I 0.844
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.844
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.844
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.844
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.843
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.843
29169.m000017 Ricinus communis 29169.m000017 I 0.843
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.843
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.843
Ca_12010 Cicer arietinum Ca_12010 I 0.843
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.842
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.842
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.842
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.842
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.840
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.840
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.840
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.840
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.840
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.840
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.838
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.838
Pm030172 Prunus mume Pm030172 I 0.838
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.838
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.838
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.838
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.838
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.837
MDP0000137561 Malus domestica MDP0000137561 I 0.837
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.837
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.837
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.836
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.836
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.835
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.835
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.835
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.835
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.835
Bo4g070350 Brassica oleracea Bo4g070350 I 0.834
Bra011939 Brassica rapa Bra011939 I 0.834
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.834
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.833
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.833
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.833
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.833
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.833
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.833
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.833
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.833
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.833
OS07G0235800 Oryza sativa OS07G0235800 I 0.833
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.833
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.833
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.833
OBART07G08110 Oryza barthii OBART07G08110 I 0.833
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.833
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.832
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.832
Ca_14618 Cicer arietinum Ca_14618 I 0.832
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.832
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.832
Si029636m.g Setaria italica Si029636m.g I 0.832
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.832
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.832
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.831
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.830
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.829
Si036068m.g Setaria italica Si036068m.g I 0.829
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.829
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.829
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.829
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.829
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.829
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.827
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.827
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.827
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.827
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.827
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.827
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.826
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.825
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.825
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.824
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.822
OB03G45870 Oryza brachyantha OB03G45870 I 0.819
mgf010466m Mimulus guttatus mgf010466m I 0.819
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.819
mgf005133m Mimulus guttatus mgf005133m I 0.819
P93632_MAIZE Zea mays P93632_MAIZE D 0.819
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.819
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.818
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.817
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.816
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.816
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.816
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.816
MDP0000163645 Malus domestica MDP0000163645 I 0.815
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.815
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.813
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.813
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.813
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.812
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.810
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.809
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.808
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.808
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.806
TOE3 Arabidopsis thaliana AT5G67180 I 0.804
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.804
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.804
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.804
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.804
Bo7g064000 Brassica oleracea Bo7g064000 I 0.800
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.800
Bra012139 Brassica rapa Bra012139 I 0.800
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.799
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.798
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.798
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.793
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.793
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.793
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.792
Cla020549 Citrullus lanatus Cla020549 I 0.789
OS03G0818800 Oryza sativa OS03G0818800 I 0.784
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.784
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.780
Cla018549 Citrullus lanatus Cla018549 I 0.775
Si006371m.g Setaria italica Si006371m.g I 0.711
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.709
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.705
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.685
PK14490.1 Cannabis sativa PK14490.1 I 0.685
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.678