CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chr1.CM0206.1000.nd
(
Lotus japonicus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
chr1.CM0206.1000.nd
T010141_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q8LKX0_MAIZE
M09722_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.724
0.851
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.690
0.809
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.690
0.809
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN
NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.689
0.830
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH
DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.689
0.830
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN
NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.689
0.830
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.686
0.830
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.686
0.830
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.677
0.830
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.677
0.830
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.677
0.830
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.677
0.809
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr1.CM0206.1000.nd
AP2
22
70
PGYRGVRMRAWGKWVSKIREPRKKNRIWLGTFATPEMAAHAHDVAALAL
Links
Other
AP2
family TFs
Other
Lotus japonicus
TFs
229 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LjSGA_095655.1
Lotus japonicus
LjSGA_095655.1
I
0.812
GLYMA08G03910
Glycine max
GLYMA08G03910
I
0.747
chr4.CM0617.510.nd
Lotus japonicus
chr4.CM0617.510.nd
I
0.747
MTR_8g102800
Medicago truncatula
MTR_8g102800
I
0.747
Ca_05941
Cicer arietinum
Ca_05941
I
0.747
GLYMA05G35741
Glycine max
GLYMA05G35741
I
0.744
Eucgr.C03785
Eucalyptus grandis
Eucgr.C03785
I
0.740
GRMZM5G816314
Zea mays
GRMZM5G816314
I
0.740
GRMZM2G072926
Zea mays
GRMZM2G072926
I
0.740
Sb04g032940
Sorghum bicolor
Sb04g032940
I
0.740
Si017865m.g
Setaria italica
Si017865m.g
I
0.740
mgf022802m
Mimulus guttatus
mgf022802m
I
0.737
Cla017050
Citrullus lanatus
Cla017050
I
0.730
Gorai.001G008100
Gossypium raimondii
Gorai.001G008100
I
0.730
Gorai.010G075300
Gossypium raimondii
Gorai.010G075300
I
0.730
Cucsa.116550
Cucumis sativus
Cucsa.116550
I
0.730
mgf019024m
Mimulus guttatus
mgf019024m
I
0.728
Pavir.Aa00833
Panicum virgatum
Pavir.Aa00833
I
0.727
Cla004187
Citrullus lanatus
Cla004187
I
0.727
Si019772m.g
Setaria italica
Si019772m.g
I
0.727
gene11882-v1.0-hybrid
Fragaria vesca
gene11882-v1.0-hybrid
I
0.727
Pavir.Ab02603
Panicum virgatum
Pavir.Ab02603
I
0.727
GLYMA01G13410
Glycine max
GLYMA01G13410
I
0.725
Q8LKX0_MAIZE
Zea mays
Q8LKX0_MAIZE
D
0.724
GRMZM5G889719
Zea mays
GRMZM5G889719
I
0.724
Sb01g029065
Sorghum bicolor
Sb01g029065
I
0.724
Pavir.Ia02208
Panicum virgatum
Pavir.Ia02208
I
0.724
Si039427m.g
Setaria italica
Si039427m.g
I
0.724
GSMUA_Achr10G14070_001
Musa acuminata
GSMUA_Achr10G14070_001
I
0.723
MTR_7g046260
Medicago truncatula
MTR_7g046260
I
0.722
GRMZM2G048621
Zea mays
GRMZM2G048621
I
0.721
F775_11989
Aegilops tauschii
F775_11989
I
0.721
GRMZM2G041839
Zea mays
GRMZM2G041839
I
0.721
Traes_1BL_E39CD252E
Triticum aestivum
Traes_1BL_E39CD252E
I
0.721
Traes_1AL_88D49649D
Triticum aestivum
Traes_1AL_88D49649D
I
0.721
Ciclev10009138m.g
Citrus clementina
Ciclev10009138m.g
I
0.720
orange1.1g041119m.g
Citrus sinensis
orange1.1g041119m.g
I
0.720
Gorai.004G281600
Gossypium raimondii
Gorai.004G281600
I
0.718
LPERR10G14320
Leersia perrieri
LPERR10G14320
I
0.718
Cucsa.235510
Cucumis sativus
Cucsa.235510
I
0.717
GSMUA_Achr9G05860_001
Musa acuminata
GSMUA_Achr9G05860_001
I
0.715
GRMZM5G806839
Zea mays
GRMZM5G806839
I
0.715
OMERI08G00520
Oryza meridionalis
OMERI08G00520
I
0.715
ONIVA10G21000
Oryza nivara
ONIVA10G21000
I
0.715
OGLUM10G18570
Oryza glumaepatula
OGLUM10G18570
I
0.715
ORGLA10G0136200
Oryza glaberrima
ORGLA10G0136200
I
0.715
OPUNC10G16830
Oryza punctata
OPUNC10G16830
I
0.715
Cla023465
Citrullus lanatus
Cla023465
I
0.713
GSMUA_Achr2G09430_001
Musa acuminata
GSMUA_Achr2G09430_001
I
0.713
BRADI3G33355
Brachypodium distachyon
BRADI3G33355
I
0.709
ORGLA02G0087100
Oryza glaberrima
ORGLA02G0087100
I
0.708
LPERR06G15020
Leersia perrieri
LPERR06G15020
I
0.708
PGSC0003DMG400000365
Solanum tuberosum
PGSC0003DMG400000365
I
0.708
OMERI02G10950
Oryza meridionalis
OMERI02G10950
I
0.708
Traes_7DL_538583735
Triticum aestivum
Traes_7DL_538583735
I
0.708
GRMZM2G073047
Zea mays
GRMZM2G073047
I
0.708
Pavir.Ab00844
Panicum virgatum
Pavir.Ab00844
I
0.708
Solyc12g008350.1
Solanum lycopersicum
Solyc12g008350.1
I
0.708
Si007144m.g
Setaria italica
Si007144m.g
I
0.708
BRADI3G08790
Brachypodium distachyon
BRADI3G08790
I
0.708
OGLUM02G09810
Oryza glumaepatula
OGLUM02G09810
I
0.708
F775_14820
Aegilops tauschii
F775_14820
I
0.708
ONIVA02G10590
Oryza nivara
ONIVA02G10590
I
0.708
OPUNC02G08670
Oryza punctata
OPUNC02G08670
I
0.708
GRMZM2G047918
Zea mays
GRMZM2G047918
I
0.708
ORUFI02G09750
Oryza rufipogon
ORUFI02G09750
I
0.708
Si018188m.g
Setaria italica
Si018188m.g
I
0.708
Cucsa.312570
Cucumis sativus
Cucsa.312570
I
0.707
GRMZM2G005301
Zea mays
GRMZM2G005301
I
0.705
OGLUM02G27070
Oryza glumaepatula
OGLUM02G27070
I
0.704
OPUNC02G24230
Oryza punctata
OPUNC02G24230
I
0.704
ONIVA02G28990
Oryza nivara
ONIVA02G28990
I
0.704
ONIVA04G19090
Oryza nivara
ONIVA04G19090
I
0.704
OMERI04G17290
Oryza meridionalis
OMERI04G17290
I
0.704
OPUNC04G18530
Oryza punctata
OPUNC04G18530
I
0.704
OMERI02G25910
Oryza meridionalis
OMERI02G25910
I
0.704
OGLUM04G20790
Oryza glumaepatula
OGLUM04G20790
I
0.704
LPERR04G16900
Leersia perrieri
LPERR04G16900
I
0.704
GRMZM2G172936
Zea mays
GRMZM2G172936
I
0.704
Traes_6DL_3019F176A
Triticum aestivum
Traes_6DL_3019F176A
I
0.704
OS04G0550200
Oryza sativa
OS04G0550200
I
0.704
Pavir.Gb01128
Panicum virgatum
Pavir.Gb01128
I
0.704
Pavir.Ga01093
Panicum virgatum
Pavir.Ga01093
I
0.704
Si012254m.g
Setaria italica
Si012254m.g
I
0.704
Pavir.Da00839
Panicum virgatum
Pavir.Da00839
I
0.704
ORGLA04G0179000
Oryza glaberrima
ORGLA04G0179000
I
0.704
LPERR02G21590
Leersia perrieri
LPERR02G21590
I
0.704
ORUFI04G22430
Oryza rufipogon
ORUFI04G22430
I
0.704
ORUFI02G28010
Oryza rufipogon
ORUFI02G28010
I
0.704
BRADI3G50630
Brachypodium distachyon
BRADI3G50630
I
0.704
BGIOSGA016884
Oryza indica
BGIOSGA016884
I
0.704
OS02G0657000
Oryza sativa
OS02G0657000
I
0.704
MLOC_3095
Hordeum vulgare
MLOC_3095
I
0.704
ONIVA06G21640
Oryza nivara
ONIVA06G21640
I
0.702
ORUFI06G19350
Oryza rufipogon
ORUFI06G19350
I
0.702
OMERI06G18780
Oryza meridionalis
OMERI06G18780
I
0.702
BRADI1G38110
Brachypodium distachyon
BRADI1G38110
I
0.702
MLOC_17203
Hordeum vulgare
MLOC_17203
I
0.702
Si002749m.g
Setaria italica
Si002749m.g
I
0.701
Sb03g002630
Sorghum bicolor
Sb03g002630
I
0.701
Cucsa.121080
Cucumis sativus
Cucsa.121080
I
0.701
Pavir.Eb00249
Panicum virgatum
Pavir.Eb00249
I
0.701
OB06G25840
Oryza brachyantha
OB06G25840
I
0.699
OS01G0200600
Oryza sativa
OS01G0200600
I
0.697
Pavir.Aa00834
Panicum virgatum
Pavir.Aa00834
I
0.697
ONIVA01G08000
Oryza nivara
ONIVA01G08000
I
0.697
OPUNC01G06210
Oryza punctata
OPUNC01G06210
I
0.697
OMERI01G06530
Oryza meridionalis
OMERI01G06530
I
0.697
OBART01G06440
Oryza barthii
OBART01G06440
I
0.697
OGLUM01G07430
Oryza glumaepatula
OGLUM01G07430
I
0.697
BGIOSGA002184
Oryza indica
BGIOSGA002184
I
0.697
ORGLA01G0061000
Oryza glaberrima
ORGLA01G0061000
I
0.697
ORUFI01G06970
Oryza rufipogon
ORUFI01G06970
I
0.697
mgf024816m
Mimulus guttatus
mgf024816m
I
0.694
evm.TU.supercontig_40.39
Carica papaya
evm.TU.supercontig_40.39
I
0.694
Pavir.Ab02601
Panicum virgatum
Pavir.Ab02601
I
0.693
Gorai.003G063500
Gossypium raimondii
Gorai.003G063500
I
0.691
GSMUA_Achr1G04350_001
Musa acuminata
GSMUA_Achr1G04350_001
I
0.691
fgenesh2_kg.5__2513__AT3G60490.1
Arabidopsis lyrata
fgenesh2_kg.5__2513__AT3G60490.1
I
0.690
ERF035
Arabidopsis thaliana
AT3G60490
D
0.690
BRADI5G17640
Brachypodium distachyon
BRADI5G17640
I
0.690
GSMUA_AchrUn_randomG24010_001
Musa acuminata
GSMUA_AchrUn_randomG24010_001
I
0.690
Bo6g121150
Brassica oleracea
Bo6g121150
I
0.689
AC187157.4_FG001
Zea mays
AC187157.4_FG001
I
0.689
Bo3g037480
Brassica oleracea
Bo3g037480
I
0.689
Bo6g083410
Brassica oleracea
Bo6g083410
I
0.689
Bra000366
Brassica rapa
Bra000366
I
0.689
TRAES3BF073700060CFD_g
Triticum aestivum
TRAES3BF073700060CFD_g
I
0.689
Thhalv10019064m.g
Eutrema salsugineum
Thhalv10019064m.g
I
0.689
fgenesh2_kg.2__2014__AT1G77200.1
Arabidopsis lyrata
fgenesh2_kg.2__2014__AT1G77200.1
I
0.689
Carubv10022336m.g
Capsella rubella
Carubv10022336m.g
I
0.689
ERF037
Arabidopsis thaliana
AT1G77200
D
0.689
Bostr.20129s0154
Boechera stricta
Bostr.20129s0154
I
0.689
Cagra.3527s0003
Capsella grandiflora
Cagra.3527s0003
I
0.688
Carubv10017799m.g
Capsella rubella
Carubv10017799m.g
I
0.688
Traes_2DL_A336122501
Triticum aestivum
Traes_2DL_A336122501
I
0.687
Traes_2BL_FC0F8A3DC
Triticum aestivum
Traes_2BL_FC0F8A3DC
I
0.687
Gorai.009G136500
Gossypium raimondii
Gorai.009G136500
I
0.687
PK01156.1
Cannabis sativa
PK01156.1
I
0.687
Traes_2AL_43491B9E0
Triticum aestivum
Traes_2AL_43491B9E0
I
0.687
F775_04501
Aegilops tauschii
F775_04501
I
0.687
Bostr.25993s0277
Boechera stricta
Bostr.25993s0277
I
0.686
ERF034
Arabidopsis thaliana
AT2G44940
D
0.686
Carubv10023699m.g
Capsella rubella
Carubv10023699m.g
I
0.686
cassava17387.m1
Manihot esculenta
cassava17387.m1
I
0.686
30174.m008790
Ricinus communis
30174.m008790
I
0.686
Cagra.0239s0048
Capsella grandiflora
Cagra.0239s0048
I
0.686
Pm017610
Prunus mume
Pm017610
I
0.686
Thhalv10001792m.g
Eutrema salsugineum
Thhalv10001792m.g
I
0.686
SapurV1A.0033s0230
Salix purpurea
SapurV1A.0033s0230
I
0.686
fgenesh2_kg.4__2683__AT2G44940.1
Arabidopsis lyrata
fgenesh2_kg.4__2683__AT2G44940.1
I
0.686
TCM_005639
Theobroma cacao
TCM_005639
I
0.686
GLYMA09G32730
Glycine max
GLYMA09G32730
I
0.686
GLYMA01G35010
Glycine max
GLYMA01G35010
I
0.686
POPTR_0002s14210
Populus trichocarpa
POPTR_0002s14210
I
0.686
PRUPE_ppa009812mg
Prunus persica
PRUPE_ppa009812mg
I
0.686
OGLUM04G20760
Oryza glumaepatula
OGLUM04G20760
I
0.685
BGIOSGA016883
Oryza indica
BGIOSGA016883
I
0.685
OPUNC04G18520
Oryza punctata
OPUNC04G18520
I
0.685
OS04G0549800
Oryza sativa
OS04G0549800
I
0.685
Bostr.13158s0050
Boechera stricta
Bostr.13158s0050
I
0.685
OMERI04G17270
Oryza meridionalis
OMERI04G17270
I
0.685
ONIVA04G19060
Oryza nivara
ONIVA04G19060
I
0.685
ORUFI04G22410
Oryza rufipogon
ORUFI04G22410
I
0.685
OBART04G20820
Oryza barthii
OBART04G20820
I
0.685
ORGLA04G0178700
Oryza glaberrima
ORGLA04G0178700
I
0.685
GSMUA_Achr6G26280_001
Musa acuminata
GSMUA_Achr6G26280_001
I
0.684
GRMZM2G028969
Zea mays
GRMZM2G028969
I
0.684
Gorai.004G165300
Gossypium raimondii
Gorai.004G165300
I
0.684
Pm013463
Prunus mume
Pm013463
I
0.684
Gorai.007G087100
Gossypium raimondii
Gorai.007G087100
I
0.683
evm.TU.supercontig_101.39
Carica papaya
evm.TU.supercontig_101.39
I
0.683
BRADI2G06180
Brachypodium distachyon
BRADI2G06180
I
0.683
PK29340.1
Cannabis sativa
PK29340.1
I
0.682
SapurV1A.0540s0020
Salix purpurea
SapurV1A.0540s0020
I
0.682
Lus10043240.g
Linum usitatissimum
Lus10043240.g
I
0.682
Lus10034949.g
Linum usitatissimum
Lus10034949.g
I
0.682
Lus10011123.g
Linum usitatissimum
Lus10011123.g
I
0.682
ORUFI10G19670
Oryza rufipogon
ORUFI10G19670
I
0.682
cassava11373.m1
Manihot esculenta
cassava11373.m1
I
0.682
POPTR_0006s17670
Populus trichocarpa
POPTR_0006s17670
I
0.682
cassava29917.valid.m1
Manihot esculenta
cassava29917.valid.m1
I
0.682
TCM_037811
Theobroma cacao
TCM_037811
I
0.682
29912.m005463
Ricinus communis
29912.m005463
I
0.682
cassava10514.m1
Manihot esculenta
cassava10514.m1
I
0.682
POPTR_0018s09270
Populus trichocarpa
POPTR_0018s09270
I
0.682
OBART02G09680
Oryza barthii
OBART02G09680
I
0.681
LjSGA_100683.2.1
Lotus japonicus
LjSGA_100683.2.1
I
0.681
MTR_6g088405
Medicago truncatula
MTR_6g088405
I
0.681
orange1.1g023148m.g
Citrus sinensis
orange1.1g023148m.g
I
0.681
Ca_17883
Cicer arietinum
Ca_17883
I
0.681
MTR_6g088425
Medicago truncatula
MTR_6g088425
I
0.681
Ciclev10024602m.g
Citrus clementina
Ciclev10024602m.g
I
0.681
Bra040333
Brassica rapa
Bra040333
I
0.680
Pavir.Ga01094
Panicum virgatum
Pavir.Ga01094
I
0.680
Bo4g195280
Brassica oleracea
Bo4g195280
I
0.680
Bo4g024220
Brassica oleracea
Bo4g024220
I
0.680
Pm027339
Prunus mume
Pm027339
I
0.680
PRUPE_ppa010130mg
Prunus persica
PRUPE_ppa010130mg
I
0.680
Bra004878
Brassica rapa
Bra004878
I
0.680
MTR_2g101340
Medicago truncatula
MTR_2g101340
I
0.679
Aquca_011_00566
Aquilegia coerulea
Aquca_011_00566
I
0.678
TCM_014892
Theobroma cacao
TCM_014892
I
0.678
PRUPE_ppa011735mg
Prunus persica
PRUPE_ppa011735mg
I
0.678
Bo7g104770
Brassica oleracea
Bo7g104770
I
0.677
Bo7g115860
Brassica oleracea
Bo7g115860
I
0.677
Thhalv10026276m.g
Eutrema salsugineum
Thhalv10026276m.g
I
0.677
ERF038
Arabidopsis thaliana
AT2G35700
D
0.677
Carubv10005867m.g
Capsella rubella
Carubv10005867m.g
I
0.677
ERF039
Arabidopsis thaliana
AT4G16750
D
0.677
Bo1g009990
Brassica oleracea
Bo1g009990
I
0.677
Thhalv10026204m.g
Eutrema salsugineum
Thhalv10026204m.g
I
0.677
Bo1g053270
Brassica oleracea
Bo1g053270
I
0.677
Bo3g171090
Brassica oleracea
Bo3g171090
I
0.677
Bra040092
Brassica rapa
Bra040092
I
0.677
cassava15622.m1
Manihot esculenta
cassava15622.m1
I
0.677
Lus10038607.g
Linum usitatissimum
Lus10038607.g
I
0.677
Ciclev10027587m.g
Citrus clementina
Ciclev10027587m.g
I
0.677
Gorai.009G050200
Gossypium raimondii
Gorai.009G050200
I
0.677
Eucgr.F03062
Eucalyptus grandis
Eucgr.F03062
I
0.677
TCM_028851
Theobroma cacao
TCM_028851
I
0.677
Bostr.30275s0134
Boechera stricta
Bostr.30275s0134
I
0.677
mgf022971m
Mimulus guttatus
mgf022971m
I
0.677
Bra034535
Brassica rapa
Bra034535
I
0.677
Bra012693
Brassica rapa
Bra012693
I
0.677
Bra037041
Brassica rapa
Bra037041
I
0.677
fgenesh2_kg.7__2633__AT4G16750.1
Arabidopsis lyrata
fgenesh2_kg.7__2633__AT4G16750.1
I
0.677
orange1.1g038538m.g
Citrus sinensis
orange1.1g038538m.g
I
0.677
Bra011383
Brassica rapa
Bra011383
I
0.677