chr1.CM0206.1000.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr1.CM0206.1000.nd T010141_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.724 0.851
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.690 0.809
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.690 0.809
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN

NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.689 0.830
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH

DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.689 0.830
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN

NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.689 0.830
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.686 0.830
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.686 0.830
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN

NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.677 0.830
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN

NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.677 0.830
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH

DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.677 0.830
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA

TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.677 0.809
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0206.1000.nd AP2 22 70

Links

Other AP2 family TFs
Other Lotus japonicus TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29912.m005463 Ricinus communis 29912.m005463 I 0.682
30174.m008790 Ricinus communis 30174.m008790 I 0.686
AC187157.4_FG001 Zea mays AC187157.4_FG001 I 0.689
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.678
BGIOSGA002184 Oryza indica BGIOSGA002184 I 0.697
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.685
BGIOSGA016884 Oryza indica BGIOSGA016884 I 0.704
Bo1g009990 Brassica oleracea Bo1g009990 I 0.677
Bo1g053270 Brassica oleracea Bo1g053270 I 0.677
Bo3g037480 Brassica oleracea Bo3g037480 I 0.689
Bo3g171090 Brassica oleracea Bo3g171090 I 0.677
Bo4g024220 Brassica oleracea Bo4g024220 I 0.680
Bo4g195280 Brassica oleracea Bo4g195280 I 0.680
Bo6g083410 Brassica oleracea Bo6g083410 I 0.689
Bo6g121150 Brassica oleracea Bo6g121150 I 0.689
Bo7g104770 Brassica oleracea Bo7g104770 I 0.677
Bo7g115860 Brassica oleracea Bo7g115860 I 0.677
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.685
Bostr.20129s0154 Boechera stricta Bostr.20129s0154 I 0.689
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.686
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.677
Bra000366 Brassica rapa Bra000366 I 0.689
Bra004878 Brassica rapa Bra004878 I 0.680
Bra011383 Brassica rapa Bra011383 I 0.677
Bra012693 Brassica rapa Bra012693 I 0.677
Bra034535 Brassica rapa Bra034535 I 0.677
Bra037041 Brassica rapa Bra037041 I 0.677
Bra040092 Brassica rapa Bra040092 I 0.677
Bra040333 Brassica rapa Bra040333 I 0.680
BRADI1G38110 Brachypodium distachyon BRADI1G38110 I 0.702
BRADI2G06180 Brachypodium distachyon BRADI2G06180 I 0.683
BRADI3G08790 Brachypodium distachyon BRADI3G08790 I 0.708
BRADI3G33355 Brachypodium distachyon BRADI3G33355 I 0.709
BRADI3G50630 Brachypodium distachyon BRADI3G50630 I 0.704
BRADI5G17640 Brachypodium distachyon BRADI5G17640 I 0.690
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.686
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.688
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.677
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.688
Carubv10022336m.g Capsella rubella Carubv10022336m.g I 0.689
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.686
cassava10514.m1 Manihot esculenta cassava10514.m1 I 0.682
cassava11373.m1 Manihot esculenta cassava11373.m1 I 0.682
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.677
cassava17387.m1 Manihot esculenta cassava17387.m1 I 0.686
cassava29917.valid.m1 Manihot esculenta cassava29917.valid.m1 I 0.682
Ca_05941 Cicer arietinum Ca_05941 I 0.747
Ca_17883 Cicer arietinum Ca_17883 I 0.681
chr4.CM0617.510.nd Lotus japonicus chr4.CM0617.510.nd I 0.747
Ciclev10009138m.g Citrus clementina Ciclev10009138m.g I 0.720
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.681
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.677
Cla004187 Citrullus lanatus Cla004187 I 0.727
Cla017050 Citrullus lanatus Cla017050 I 0.730
Cla023465 Citrullus lanatus Cla023465 I 0.713
Cucsa.116550 Cucumis sativus Cucsa.116550 I 0.730
Cucsa.121080 Cucumis sativus Cucsa.121080 I 0.701
Cucsa.235510 Cucumis sativus Cucsa.235510 I 0.717
Cucsa.312570 Cucumis sativus Cucsa.312570 I 0.707
ERF034 Arabidopsis thaliana AT2G44940 D 0.686
ERF035 Arabidopsis thaliana AT3G60490 D 0.690
ERF037 Arabidopsis thaliana AT1G77200 D 0.689
ERF038 Arabidopsis thaliana AT2G35700 D 0.677
ERF039 Arabidopsis thaliana AT4G16750 D 0.677
Eucgr.C03785 Eucalyptus grandis Eucgr.C03785 I 0.740
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.677
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.683
evm.TU.supercontig_40.39 Carica papaya evm.TU.supercontig_40.39 I 0.694
F775_04501 Aegilops tauschii F775_04501 I 0.687
F775_11989 Aegilops tauschii F775_11989 I 0.721
F775_14820 Aegilops tauschii F775_14820 I 0.708
fgenesh2_kg.2__2014__AT1G77200.1 Arabidopsis lyrata fgenesh2_kg.2__2014__AT1G77200.1 I 0.689
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.686
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.690
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.677
gene11882-v1.0-hybrid Fragaria vesca gene11882-v1.0-hybrid I 0.727
GLYMA01G13410 Glycine max GLYMA01G13410 I 0.725
GLYMA01G35010 Glycine max GLYMA01G35010 I 0.686
GLYMA05G35741 Glycine max GLYMA05G35741 I 0.744
GLYMA08G03910 Glycine max GLYMA08G03910 I 0.747
GLYMA09G32730 Glycine max GLYMA09G32730 I 0.686
Gorai.001G008100 Gossypium raimondii Gorai.001G008100 I 0.730
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.691
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.684
Gorai.004G281600 Gossypium raimondii Gorai.004G281600 I 0.718
Gorai.007G087100 Gossypium raimondii Gorai.007G087100 I 0.683
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.677
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.687
Gorai.010G075300 Gossypium raimondii Gorai.010G075300 I 0.730
GRMZM2G005301 Zea mays GRMZM2G005301 I 0.705
GRMZM2G028969 Zea mays GRMZM2G028969 I 0.684
GRMZM2G041839 Zea mays GRMZM2G041839 I 0.721
GRMZM2G047918 Zea mays GRMZM2G047918 I 0.708
GRMZM2G048621 Zea mays GRMZM2G048621 I 0.721
GRMZM2G072926 Zea mays GRMZM2G072926 I 0.740
GRMZM2G073047 Zea mays GRMZM2G073047 I 0.708
GRMZM2G172936 Zea mays GRMZM2G172936 I 0.704
GRMZM5G806839 Zea mays GRMZM5G806839 I 0.715
GRMZM5G816314 Zea mays GRMZM5G816314 I 0.740
GRMZM5G889719 Zea mays GRMZM5G889719 I 0.724
GSMUA_Achr10G14070_001 Musa acuminata GSMUA_Achr10G14070_001 I 0.723
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.691
GSMUA_Achr2G09430_001 Musa acuminata GSMUA_Achr2G09430_001 I 0.713
GSMUA_Achr6G26280_001 Musa acuminata GSMUA_Achr6G26280_001 I 0.684
GSMUA_Achr9G05860_001 Musa acuminata GSMUA_Achr9G05860_001 I 0.715
GSMUA_AchrUn_randomG24010_001 Musa acuminata GSMUA_AchrUn_randomG24010_001 I 0.690
LjSGA_095655.1 Lotus japonicus LjSGA_095655.1 I 0.812
LjSGA_100683.2.1 Lotus japonicus LjSGA_100683.2.1 I 0.681
LPERR02G21590 Leersia perrieri LPERR02G21590 I 0.704
LPERR04G16900 Leersia perrieri LPERR04G16900 I 0.704
LPERR06G15020 Leersia perrieri LPERR06G15020 I 0.708
LPERR10G14320 Leersia perrieri LPERR10G14320 I 0.718
Lus10011123.g Linum usitatissimum Lus10011123.g I 0.682
Lus10034949.g Linum usitatissimum Lus10034949.g I 0.682
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.677
Lus10043240.g Linum usitatissimum Lus10043240.g I 0.682
mgf019024m Mimulus guttatus mgf019024m I 0.728
mgf022802m Mimulus guttatus mgf022802m I 0.737
mgf022971m Mimulus guttatus mgf022971m I 0.677
mgf024816m Mimulus guttatus mgf024816m I 0.694
MLOC_17203 Hordeum vulgare MLOC_17203 I 0.702
MLOC_3095 Hordeum vulgare MLOC_3095 I 0.704
MTR_2g101340 Medicago truncatula MTR_2g101340 I 0.679
MTR_6g088405 Medicago truncatula MTR_6g088405 I 0.681
MTR_6g088425 Medicago truncatula MTR_6g088425 I 0.681
MTR_7g046260 Medicago truncatula MTR_7g046260 I 0.722
MTR_8g102800 Medicago truncatula MTR_8g102800 I 0.747
OB06G25840 Oryza brachyantha OB06G25840 I 0.699
OBART01G06440 Oryza barthii OBART01G06440 I 0.697
OBART02G09680 Oryza barthii OBART02G09680 I 0.681
OBART04G20820 Oryza barthii OBART04G20820 I 0.685
OGLUM01G07430 Oryza glumaepatula OGLUM01G07430 I 0.697
OGLUM02G09810 Oryza glumaepatula OGLUM02G09810 I 0.708
OGLUM02G27070 Oryza glumaepatula OGLUM02G27070 I 0.704
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.685
OGLUM04G20790 Oryza glumaepatula OGLUM04G20790 I 0.704
OGLUM10G18570 Oryza glumaepatula OGLUM10G18570 I 0.715
OMERI01G06530 Oryza meridionalis OMERI01G06530 I 0.697
OMERI02G10950 Oryza meridionalis OMERI02G10950 I 0.708
OMERI02G25910 Oryza meridionalis OMERI02G25910 I 0.704
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.685
OMERI04G17290 Oryza meridionalis OMERI04G17290 I 0.704
OMERI06G18780 Oryza meridionalis OMERI06G18780 I 0.702
OMERI08G00520 Oryza meridionalis OMERI08G00520 I 0.715
ONIVA01G08000 Oryza nivara ONIVA01G08000 I 0.697
ONIVA02G10590 Oryza nivara ONIVA02G10590 I 0.708
ONIVA02G28990 Oryza nivara ONIVA02G28990 I 0.704
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.685
ONIVA04G19090 Oryza nivara ONIVA04G19090 I 0.704
ONIVA06G21640 Oryza nivara ONIVA06G21640 I 0.702
ONIVA10G21000 Oryza nivara ONIVA10G21000 I 0.715
OPUNC01G06210 Oryza punctata OPUNC01G06210 I 0.697
OPUNC02G08670 Oryza punctata OPUNC02G08670 I 0.708
OPUNC02G24230 Oryza punctata OPUNC02G24230 I 0.704
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.685
OPUNC04G18530 Oryza punctata OPUNC04G18530 I 0.704
OPUNC10G16830 Oryza punctata OPUNC10G16830 I 0.715
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.681
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.677
orange1.1g041119m.g Citrus sinensis orange1.1g041119m.g I 0.720
ORGLA01G0061000 Oryza glaberrima ORGLA01G0061000 I 0.697
ORGLA02G0087100 Oryza glaberrima ORGLA02G0087100 I 0.708
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.685
ORGLA04G0179000 Oryza glaberrima ORGLA04G0179000 I 0.704
ORGLA10G0136200 Oryza glaberrima ORGLA10G0136200 I 0.715
ORUFI01G06970 Oryza rufipogon ORUFI01G06970 I 0.697
ORUFI02G09750 Oryza rufipogon ORUFI02G09750 I 0.708
ORUFI02G28010 Oryza rufipogon ORUFI02G28010 I 0.704
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.685
ORUFI04G22430 Oryza rufipogon ORUFI04G22430 I 0.704
ORUFI06G19350 Oryza rufipogon ORUFI06G19350 I 0.702
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.682
OS01G0200600 Oryza sativa OS01G0200600 I 0.697
OS02G0657000 Oryza sativa OS02G0657000 I 0.704
OS04G0549800 Oryza sativa OS04G0549800 I 0.685
OS04G0550200 Oryza sativa OS04G0550200 I 0.704
Pavir.Aa00833 Panicum virgatum Pavir.Aa00833 I 0.727
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.697
Pavir.Ab00844 Panicum virgatum Pavir.Ab00844 I 0.708
Pavir.Ab02601 Panicum virgatum Pavir.Ab02601 I 0.693
Pavir.Ab02603 Panicum virgatum Pavir.Ab02603 I 0.727
Pavir.Da00839 Panicum virgatum Pavir.Da00839 I 0.704
Pavir.Eb00249 Panicum virgatum Pavir.Eb00249 I 0.701
Pavir.Ga01093 Panicum virgatum Pavir.Ga01093 I 0.704
Pavir.Ga01094 Panicum virgatum Pavir.Ga01094 I 0.680
Pavir.Gb01128 Panicum virgatum Pavir.Gb01128 I 0.704
Pavir.Ia02208 Panicum virgatum Pavir.Ia02208 I 0.724
PGSC0003DMG400000365 Solanum tuberosum PGSC0003DMG400000365 I 0.708
PK01156.1 Cannabis sativa PK01156.1 I 0.687
PK29340.1 Cannabis sativa PK29340.1 I 0.682
Pm013463 Prunus mume Pm013463 I 0.684
Pm017610 Prunus mume Pm017610 I 0.686
Pm027339 Prunus mume Pm027339 I 0.680
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.686
POPTR_0006s17670 Populus trichocarpa POPTR_0006s17670 I 0.682
POPTR_0018s09270 Populus trichocarpa POPTR_0018s09270 I 0.682
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.686
PRUPE_ppa010130mg Prunus persica PRUPE_ppa010130mg I 0.680
PRUPE_ppa011735mg Prunus persica PRUPE_ppa011735mg I 0.678
Q8LKX0_MAIZE Zea mays Q8LKX0_MAIZE D 0.724
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.686
SapurV1A.0540s0020 Salix purpurea SapurV1A.0540s0020 I 0.682
Sb01g029065 Sorghum bicolor Sb01g029065 I 0.724
Sb03g002630 Sorghum bicolor Sb03g002630 I 0.701
Sb04g032940 Sorghum bicolor Sb04g032940 I 0.740
Si002749m.g Setaria italica Si002749m.g I 0.701
Si007144m.g Setaria italica Si007144m.g I 0.708
Si012254m.g Setaria italica Si012254m.g I 0.704
Si017865m.g Setaria italica Si017865m.g I 0.740
Si018188m.g Setaria italica Si018188m.g I 0.708
Si019772m.g Setaria italica Si019772m.g I 0.727
Si039427m.g Setaria italica Si039427m.g I 0.724
Solyc12g008350.1 Solanum lycopersicum Solyc12g008350.1 I 0.708
TCM_005639 Theobroma cacao TCM_005639 I 0.686
TCM_014892 Theobroma cacao TCM_014892 I 0.678
TCM_028851 Theobroma cacao TCM_028851 I 0.677
TCM_037811 Theobroma cacao TCM_037811 I 0.682
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.686
Thhalv10019064m.g Eutrema salsugineum Thhalv10019064m.g I 0.689
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.677
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.677
TRAES3BF073700060CFD_g Triticum aestivum TRAES3BF073700060CFD_g I 0.689
Traes_1AL_88D49649D Triticum aestivum Traes_1AL_88D49649D I 0.721
Traes_1BL_E39CD252E Triticum aestivum Traes_1BL_E39CD252E I 0.721
Traes_2AL_43491B9E0 Triticum aestivum Traes_2AL_43491B9E0 I 0.687
Traes_2BL_FC0F8A3DC Triticum aestivum Traes_2BL_FC0F8A3DC I 0.687
Traes_2DL_A336122501 Triticum aestivum Traes_2DL_A336122501 I 0.687
Traes_6DL_3019F176A Triticum aestivum Traes_6DL_3019F176A I 0.704
Traes_7DL_538583735 Triticum aestivum Traes_7DL_538583735 I 0.708