chr1.CM0371.120.nc (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr1.CM0371.120.nc T010148_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN

NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.831 0.961
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND

HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.831 0.961
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0371.120.nc AP2 33 84

Links

Other AP2 family TFs
Other Lotus japonicus TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000177547 Malus domestica MDP0000177547 I 0.833
Ca_08232 Cicer arietinum Ca_08232 I 0.833
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.833
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.833
Pm025326 Prunus mume Pm025326 I 0.833
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.833
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.833
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.833
TCM_025913 Theobroma cacao TCM_025913 I 0.833
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.833
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.833
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.833
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.833
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.833
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.831
30084.m000185 Ricinus communis 30084.m000185 I 0.831
Bo2g018360 Brassica oleracea Bo2g018360 I 0.831
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.831
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.831
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.831
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.831
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.831
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.831
OBART07G06690 Oryza barthii OBART07G06690 I 0.831
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.831
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.831
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.831
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.831
Bra020063 Brassica rapa Bra020063 I 0.831
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.831
Bra006518 Brassica rapa Bra006518 I 0.831
Bra002262 Brassica rapa Bra002262 I 0.831
Bo3g013830 Brassica oleracea Bo3g013830 I 0.831
Bo9g152440 Brassica oleracea Bo9g152440 I 0.831
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.831
OS07G0204000 Oryza sativa OS07G0204000 I 0.831
OB07G15030 Oryza brachyantha OB07G15030 I 0.831
TCM_040015 Theobroma cacao TCM_040015 I 0.831
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.831
mgf022665m Mimulus guttatus mgf022665m I 0.830
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.830
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.829
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.828
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.828
Si033237m.g Setaria italica Si033237m.g I 0.828
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.827
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.826
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.826
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.825
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.823
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.822
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.821
Cla012318 Citrullus lanatus Cla012318 I 0.820
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.820
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.818
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.818
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.818
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.818
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.817
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.816
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.807
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.805
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.805
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.803
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.799
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.799
Si024417m.g Setaria italica Si024417m.g I 0.799
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.799
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.799
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.799
Cla010474 Citrullus lanatus Cla010474 I 0.799
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.799
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.799
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.799
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.799
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.799
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.799
Si038848m.g Setaria italica Si038848m.g I 0.796
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.796
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.796
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.796
PK13330.1 Cannabis sativa PK13330.1 I 0.796
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.796
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.796
29635.m000461 Ricinus communis 29635.m000461 I 0.796
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.796
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.796
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.796
Pm015931 Prunus mume Pm015931 I 0.796
MDP0000276536 Malus domestica MDP0000276536 I 0.796
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.796
MDP0000551969 Malus domestica MDP0000551969 I 0.796
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.796
Ca_10494 Cicer arietinum Ca_10494 I 0.796
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.796
TCM_018659 Theobroma cacao TCM_018659 I 0.796
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.796
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.796
OBART12G17080 Oryza barthii OBART12G17080 I 0.796
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.796
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.796
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.796
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.796
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.796
OS12G0582900 Oryza sativa OS12G0582900 I 0.796
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.796
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.796
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.796
F775_02727 Aegilops tauschii F775_02727 I 0.796
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.796
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.796
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.796
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.796
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.796
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.794
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.794
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.794
29813.m001543 Ricinus communis 29813.m001543 I 0.794
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.794
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.794
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.792
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.790
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.790
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.786
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.786
mgf022810m Mimulus guttatus mgf022810m I 0.784
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.784
mgf023693m Mimulus guttatus mgf023693m I 0.784
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.782
Pm000004 Prunus mume Pm000004 I 0.780
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.780
MDP0000525933 Malus domestica MDP0000525933 I 0.780
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.779
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.779
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.778
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.778
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.776
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.773
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.767
MDP0000128326 Malus domestica MDP0000128326 I 0.766
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.766
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.759
TCM_011632 Theobroma cacao TCM_011632 I 0.758
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.758
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.758
F775_04303 Aegilops tauschii F775_04303 I 0.757
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.750
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.750
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.748
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.747
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.747
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.746
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.741
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.738
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.737
PK25269.1 Cannabis sativa PK25269.1 I 0.735
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.734
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.734
30174.m009031 Ricinus communis 30174.m009031 I 0.733
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.733
Cla021590 Citrullus lanatus Cla021590 I 0.731
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.731
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.728
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.728
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.728
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.727
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.727
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.727
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.726
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.726
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.726
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.725
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.724
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.724
TCM_005425 Theobroma cacao TCM_005425 I 0.724
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.724
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.724
MDP0000133476 Malus domestica MDP0000133476 I 0.724
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.724
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.724
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.724
Pm008788 Prunus mume Pm008788 I 0.724
MDP0000138669 Malus domestica MDP0000138669 I 0.724
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.724
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.724
mgf018851m Mimulus guttatus mgf018851m I 0.724
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.724
Si032213m.g Setaria italica Si032213m.g I 0.723
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.723
OB09G23520 Oryza brachyantha OB09G23520 I 0.723
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.722
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.721
30174.m008961 Ricinus communis 30174.m008961 I 0.720
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.718
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.718
Si030686m.g Setaria italica Si030686m.g I 0.718
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.718
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.718
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.718
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.717
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.717
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.717
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.716
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.716
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.716
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.716
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.716
OS07G0575000 Oryza sativa OS07G0575000 I 0.716
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.716
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.716
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.716
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.716
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.716
OBART07G19610 Oryza barthii OBART07G19610 I 0.716
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.715
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.711
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.711
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.708
Ca_25424 Cicer arietinum Ca_25424 I 0.706
MDP0000197375 Malus domestica MDP0000197375 I 0.705
Pm030235 Prunus mume Pm030235 I 0.705
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.705
MDP0000157628 Malus domestica MDP0000157628 I 0.705
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.704
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.704
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.704
Ca_16397 Cicer arietinum Ca_16397 I 0.704
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.704
TCM_014471 Theobroma cacao TCM_014471 I 0.703
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.702
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.702
Ca_00417 Cicer arietinum Ca_00417 I 0.698
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.698
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.694
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.694
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.688
PK28640.1 Cannabis sativa PK28640.1 I 0.687
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.687
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.687
TCM_015579 Theobroma cacao TCM_015579 I 0.687
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.687
MDP0000172804 Malus domestica MDP0000172804 I 0.685
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.684
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.684
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.683
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.683
Si027288m.g Setaria italica Si027288m.g I 0.682
30068.m002623 Ricinus communis 30068.m002623 I 0.681
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.679
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.678
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.678
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.677
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.677