chr1.LjT23O20.60.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr1.LjT23O20.60.nd T010156_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN

NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.751 0.880
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN

NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.751 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjT23O20.60.nd AP2 100 151

Links

Other AP2 family TFs
Other Lotus japonicus TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.799
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.792
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.775
MDP0000790788 Malus domestica MDP0000790788 I 0.774
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.751
Bo7g095710 Brassica oleracea Bo7g095710 I 0.751
Bra009862 Brassica rapa Bra009862 I 0.751
TINY Arabidopsis thaliana AT5G25810 D 0.751
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.748
Bra023332 Brassica rapa Bra023332 I 0.745
Bo2g010530 Brassica oleracea Bo2g010530 I 0.745
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.745
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.742
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.739
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.736
Cla021417 Citrullus lanatus Cla021417 I 0.734
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.732
MDP0000174352 Malus domestica MDP0000174352 I 0.731
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.731
Ca_01908 Cicer arietinum Ca_01908 I 0.731
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.731
Ca_28185 Cicer arietinum Ca_28185 I 0.731
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.727
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.727
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.726
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.725
29794.m003381 Ricinus communis 29794.m003381 I 0.724
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.724
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.724
Pm005151 Prunus mume Pm005151 I 0.724
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.724
PK28082.1 Cannabis sativa PK28082.1 I 0.724
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.724
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.724
TCM_037194 Theobroma cacao TCM_037194 I 0.724
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.724
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.724
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.724
MDP0000242611 Malus domestica MDP0000242611 I 0.724
MDP0000241650 Malus domestica MDP0000241650 I 0.724
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.724
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.724
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.724
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.724
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.723
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.723
Bo9g170060 Brassica oleracea Bo9g170060 I 0.723
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.723
Bra008952 Brassica rapa Bra008952 I 0.723
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.723
mgf024703m Mimulus guttatus mgf024703m I 0.723
DREB3 Arabidopsis thaliana AT5G11590 I 0.723
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.723
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.721
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.721
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.721
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.721
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.721
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.718
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.715
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.714
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.714
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.711
Cla022553 Citrullus lanatus Cla022553 I 0.709
mgf026339m Mimulus guttatus mgf026339m I 0.708
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.706
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.706
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.706
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.706
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.704
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.704
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.702
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.702
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.702
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.702
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.702
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.701
Ca_14911 Cicer arietinum Ca_14911 I 0.700
MTR_2g101340 Medicago truncatula MTR_2g101340 I 0.700
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.697
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.696
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.695
Bra036552 Brassica rapa Bra036552 I 0.692
Bo9g011210 Brassica oleracea Bo9g011210 I 0.692
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.692
LjT43F20.80.nd Lotus japonicus LjT43F20.80.nd I 0.689
Bo6g077080 Brassica oleracea Bo6g077080 I 0.686
Bra003415 Brassica rapa Bra003415 I 0.686
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.684
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.681
mgf024816m Mimulus guttatus mgf024816m I 0.680
Traes_2AL_43491B9E0 Triticum aestivum Traes_2AL_43491B9E0 I 0.678
F775_04501 Aegilops tauschii F775_04501 I 0.678
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.678
Traes_2BL_FC0F8A3DC Triticum aestivum Traes_2BL_FC0F8A3DC I 0.678
Traes_2DL_A336122501 Triticum aestivum Traes_2DL_A336122501 I 0.678
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.677
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.677
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.677