chr2.CM0304.640.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr2.CM0304.640.nd T010167_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.719 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.719 0.840
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.685 0.800
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.685 0.800
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.685 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0304.640.nd AP2 56 107

Links

Other AP2 family TFs
Other Lotus japonicus TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.739
Ca_08732 Cicer arietinum Ca_08732 I 0.736
LjSGA_077560.1 Lotus japonicus LjSGA_077560.1 N 0.735
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.729
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.729
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.726
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.724
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.723
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.719
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.719
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.719
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.719
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.719
Bra028290 Brassica rapa Bra028290 I 0.719
Bo9g104770 Brassica oleracea Bo9g104770 I 0.719
DREB1D Arabidopsis thaliana AT5G51990 D 0.719
30190.m011119 Ricinus communis 30190.m011119 I 0.713
Cla002362 Citrullus lanatus Cla002362 I 0.711
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.707
mgf019061m Mimulus guttatus mgf019061m I 0.702
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.700
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.699
mgf017136m Mimulus guttatus mgf017136m I 0.698
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.698
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.697
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.695
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.694
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.694
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.694
mgf026642m Mimulus guttatus mgf026642m I 0.692
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.688
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.687
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.687
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.686
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.685
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.685
DREB1C Arabidopsis thaliana AT4G25470 D 0.685
PK23332.1 Cannabis sativa PK23332.1 I 0.685
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.684
Cla006315 Citrullus lanatus Cla006315 I 0.684
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.684
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.684
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.683
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.682
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.681
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.680
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.680
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.678
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.678
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.677
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.677