CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chr3.CM0080.190.nd
(
Lotus japonicus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
chr3.CM0080.190.nd
T010178_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF098
M01618_2.00
Arabidopsis thaliana
NNGCCGNC
GNCGGCNN
PBM
Weirauch et al.(2014)
pTH8259
0.700
0.735
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.691
0.796
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.691
0.796
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.691
0.796
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr3.CM0080.190.nd
AP2
92
144
KRYRGVRRRPWGKFAREIRDPKKNGARVWLGTYKTEEEAALAYDRAAFKIHGR
Links
Other
AP2
family TFs
Other
Lotus japonicus
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
chr3.CM0080.200.nd
Lotus japonicus
chr3.CM0080.200.nd
I
0.766
MTR_8g006825
Medicago truncatula
MTR_8g006825
I
0.761
GLYMA03G26520
Glycine max
GLYMA03G26520
I
0.750
chr3.CM0080.80.nd
Lotus japonicus
chr3.CM0080.80.nd
I
0.740
Ca_06034
Cicer arietinum
Ca_06034
I
0.740
LjSGA_078116.1
Lotus japonicus
LjSGA_078116.1
I
0.740
Ca_06032
Cicer arietinum
Ca_06032
I
0.732
MTR_7g081815
Medicago truncatula
MTR_7g081815
I
0.732
MTR_7g081805
Medicago truncatula
MTR_7g081805
I
0.732
MTR_7g081795
Medicago truncatula
MTR_7g081795
I
0.730
Thhalv10029212m.g
Eutrema salsugineum
Thhalv10029212m.g
I
0.713
Eucgr.G00002
Eucalyptus grandis
Eucgr.G00002
I
0.711
Bostr.14547s0008
Boechera stricta
Bostr.14547s0008
I
0.708
Cla021851
Citrullus lanatus
Cla021851
I
0.707
GLYMA20G34560
Glycine max
GLYMA20G34560
I
0.704
GLYMA10G33070
Glycine max
GLYMA10G33070
I
0.704
MDP0000830129
Malus domestica
MDP0000830129
I
0.704
SapurV1A.0124s0170
Salix purpurea
SapurV1A.0124s0170
I
0.703
POPTR_0014s04640
Populus trichocarpa
POPTR_0014s04640
I
0.702
MTR_1g074310
Medicago truncatula
MTR_1g074310
I
0.702
cassava41639.m1
Manihot esculenta
cassava41639.m1
I
0.701
Carubv10005868m.g
Capsella rubella
Carubv10005868m.g
I
0.701
Eucgr.E01561
Eucalyptus grandis
Eucgr.E01561
I
0.701
Cagra.4714s0001
Capsella grandiflora
Cagra.4714s0001
I
0.701
Carubv10015406m.g
Capsella rubella
Carubv10015406m.g
I
0.700
Bostr.19424s0320
Boechera stricta
Bostr.19424s0320
I
0.700
MDP0000930655
Malus domestica
MDP0000930655
I
0.700
ERF098
Arabidopsis thaliana
AT3G23230
D
0.700
Cagra.8559s0002
Capsella grandiflora
Cagra.8559s0002
I
0.700
Cucsa.260040
Cucumis sativus
Cucsa.260040
I
0.700
scaffold_604310.1
Arabidopsis lyrata
scaffold_604310.1
I
0.699
PRUPE_ppb014367mg
Prunus persica
PRUPE_ppb014367mg
I
0.699
Eucgr.G00397
Eucalyptus grandis
Eucgr.G00397
I
0.698
GLYMA18G48741
Glycine max
GLYMA18G48741
I
0.697
TCM_005706
Theobroma cacao
TCM_005706
I
0.697
GLYMA03G26437
Glycine max
GLYMA03G26437
I
0.696
cassava19881.m1
Manihot esculenta
cassava19881.m1
I
0.694
GLYMA10G00990
Glycine max
GLYMA10G00990
I
0.694
Pm017696
Prunus mume
Pm017696
I
0.693
PRUPE_ppa016903mg
Prunus persica
PRUPE_ppa016903mg
I
0.693
POPTR_0014s04600
Populus trichocarpa
POPTR_0014s04600
I
0.693
Ca_12080
Cicer arietinum
Ca_12080
I
0.692
orange1.1g044584m.g
Citrus sinensis
orange1.1g044584m.g
I
0.692
Bra037630
Brassica rapa
Bra037630
I
0.691
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.691
Bra004873
Brassica rapa
Bra004873
I
0.691
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.691
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.691
30174.m008755
Ricinus communis
30174.m008755
I
0.691
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.691
ERF13
Arabidopsis thaliana
AT2G44840
D
0.691
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.691
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.691
cassava19882.m1
Manihot esculenta
cassava19882.m1
I
0.690
Gorai.007G086000
Gossypium raimondii
Gorai.007G086000
I
0.690
fgenesh2_kg.3__2538__AT3G23230.1
Arabidopsis lyrata
fgenesh2_kg.3__2538__AT3G23230.1
I
0.690
fgenesh2_kg.471__1__AT3G23230.1
Arabidopsis lyrata
fgenesh2_kg.471__1__AT3G23230.1
I
0.690
Eucgr.G00392
Eucalyptus grandis
Eucgr.G00392
I
0.689
Pm017699
Prunus mume
Pm017699
I
0.689
POPTR_0014s04610
Populus trichocarpa
POPTR_0014s04610
I
0.689
Bo9g001020
Brassica oleracea
Bo9g001020
I
0.688
Eucgr.G00391
Eucalyptus grandis
Eucgr.G00391
I
0.687
Eucgr.G00390
Eucalyptus grandis
Eucgr.G00390
I
0.687
Solyc09g066350.1
Solanum lycopersicum
Solyc09g066350.1
I
0.685
PGSC0003DMG400010309
Solanum tuberosum
PGSC0003DMG400010309
I
0.685
mgf021973m
Mimulus guttatus
mgf021973m
I
0.684
gene04917-v1.0-hybrid
Fragaria vesca
gene04917-v1.0-hybrid
I
0.684
TCM_005707
Theobroma cacao
TCM_005707
I
0.684
GLYMA09G37780
Glycine max
GLYMA09G37780
I
0.683
Pm020605
Prunus mume
Pm020605
I
0.683
PRUPE_ppa020642mg
Prunus persica
PRUPE_ppa020642mg
I
0.683
gene21165-v1.0-hybrid
Fragaria vesca
gene21165-v1.0-hybrid
I
0.683
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.683
Eucgr.G00388
Eucalyptus grandis
Eucgr.G00388
I
0.682
SapurV1A.0233s0380
Salix purpurea
SapurV1A.0233s0380
I
0.682
gene08075-v1.0-hybrid
Fragaria vesca
gene08075-v1.0-hybrid
I
0.682
MTR_8g006815
Medicago truncatula
MTR_8g006815
I
0.681
Gorai.007G145700
Gossypium raimondii
Gorai.007G145700
I
0.680
GLYMA18G48730
Glycine max
GLYMA18G48730
I
0.679
POPTR_0005s24450
Populus trichocarpa
POPTR_0005s24450
I
0.679
cassava19883.m1
Manihot esculenta
cassava19883.m1
I
0.678
30174.m008756
Ricinus communis
30174.m008756
I
0.678
Lus10029331.g
Linum usitatissimum
Lus10029331.g
I
0.678