chr3.CM0080.80.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr3.CM0080.80.nd T010181_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF098
M01618_2.00 		Arabidopsis thaliana
NNGCCGNC
GNCGGCNN		 PBM
Weirauch et al.(2014)
pTH8259 		0.716 0.755
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.707 0.816
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.707 0.816
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.707 0.816
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.679 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0080.80.nd AP2 92 144

Links

Other AP2 family TFs
Other Lotus japonicus TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_078116.1 Lotus japonicus LjSGA_078116.1 I 0.847
GLYMA03G26520 Glycine max GLYMA03G26520 I 0.778
chr3.CM0080.200.nd Lotus japonicus chr3.CM0080.200.nd I 0.772
Ca_06034 Cicer arietinum Ca_06034 I 0.768
MTR_8g006825 Medicago truncatula MTR_8g006825 I 0.767
MTR_7g081805 Medicago truncatula MTR_7g081805 I 0.760
MTR_7g081815 Medicago truncatula MTR_7g081815 I 0.760
Ca_06032 Cicer arietinum Ca_06032 I 0.760
MTR_7g081795 Medicago truncatula MTR_7g081795 I 0.759
Carubv10005868m.g Capsella rubella Carubv10005868m.g I 0.743
Cagra.4714s0001 Capsella grandiflora Cagra.4714s0001 I 0.743
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.740
chr3.CM0080.190.nd Lotus japonicus chr3.CM0080.190.nd I 0.740
Bostr.14547s0008 Boechera stricta Bostr.14547s0008 I 0.737
scaffold_604310.1 Arabidopsis lyrata scaffold_604310.1 I 0.735
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.734
Pm017696 Prunus mume Pm017696 I 0.734
MDP0000830129 Malus domestica MDP0000830129 I 0.730
Eucgr.E01561 Eucalyptus grandis Eucgr.E01561 I 0.729
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.728
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.727
GLYMA10G00990 Glycine max GLYMA10G00990 I 0.727
30174.m008755 Ricinus communis 30174.m008755 I 0.726
TCM_005706 Theobroma cacao TCM_005706 I 0.726
GLYMA18G48741 Glycine max GLYMA18G48741 I 0.726
GLYMA03G26437 Glycine max GLYMA03G26437 I 0.725
Bo9g001020 Brassica oleracea Bo9g001020 I 0.723
Cla021851 Citrullus lanatus Cla021851 I 0.723
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I 0.722
cassava19881.m1 Manihot esculenta cassava19881.m1 I 0.722
POPTR_0014s04600 Populus trichocarpa POPTR_0014s04600 I 0.722
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I 0.722
GLYMA09G37780 Glycine max GLYMA09G37780 I 0.721
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.720
TCM_005707 Theobroma cacao TCM_005707 I 0.719
cassava19882.m1 Manihot esculenta cassava19882.m1 I 0.719
MDP0000930655 Malus domestica MDP0000930655 I 0.719
Thhalv10029212m.g Eutrema salsugineum Thhalv10029212m.g I 0.719
Gorai.007G086000 Gossypium raimondii Gorai.007G086000 I 0.718
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I 0.718
Pm017699 Prunus mume Pm017699 I 0.718
cassava41639.m1 Manihot esculenta cassava41639.m1 I 0.717
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I 0.717
GLYMA20G34560 Glycine max GLYMA20G34560 I 0.717
GLYMA10G33070 Glycine max GLYMA10G33070 I 0.717
GLYMA18G48730 Glycine max GLYMA18G48730 I 0.717
Cagra.8559s0002 Capsella grandiflora Cagra.8559s0002 I 0.716
Bostr.19424s0320 Boechera stricta Bostr.19424s0320 I 0.716
Carubv10015406m.g Capsella rubella Carubv10015406m.g I 0.716
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.716
ERF098 Arabidopsis thaliana AT3G23230 D 0.716
MTR_1g074310 Medicago truncatula MTR_1g074310 I 0.715
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.715
gene21165-v1.0-hybrid Fragaria vesca gene21165-v1.0-hybrid I 0.712
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I 0.711
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.711
Eucgr.G00388 Eucalyptus grandis Eucgr.G00388 I 0.711
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.710
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.708
Bra037630 Brassica rapa Bra037630 I 0.707
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.707
Bra004873 Brassica rapa Bra004873 I 0.707
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.707
ERF13 Arabidopsis thaliana AT2G44840 D 0.707
Bo4g024140 Brassica oleracea Bo4g024140 I 0.707
Bo4g195220 Brassica oleracea Bo4g195220 I 0.707
30174.m008756 Ricinus communis 30174.m008756 I 0.707
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.707
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.707
Gorai.004G165800 Gossypium raimondii Gorai.004G165800 I 0.707
Lus10029331.g Linum usitatissimum Lus10029331.g I 0.707
Cucsa.260040 Cucumis sativus Cucsa.260040 I 0.706
fgenesh2_kg.3__2538__AT3G23230.1 Arabidopsis lyrata fgenesh2_kg.3__2538__AT3G23230.1 I 0.706
fgenesh2_kg.471__1__AT3G23230.1 Arabidopsis lyrata fgenesh2_kg.471__1__AT3G23230.1 I 0.706
POPTR_0014s04630 Populus trichocarpa POPTR_0014s04630 I 0.705
Eucgr.G00396 Eucalyptus grandis Eucgr.G00396 I 0.705
Ca_12080 Cicer arietinum Ca_12080 I 0.705
Eucgr.G00394 Eucalyptus grandis Eucgr.G00394 I 0.705
GLYMA03G26394 Glycine max GLYMA03G26394 I 0.704
MTR_4g088005 Medicago truncatula MTR_4g088005 I 0.704
Eucgr.G00393 Eucalyptus grandis Eucgr.G00393 I 0.704
SELMODRAFT_37123 Selaginella moellendorffii SELMODRAFT_37123 I 0.701
Solyc02g077370.1 Solanum lycopersicum Solyc02g077370.1 I 0.701
PGSC0003DMG400010724 Solanum tuberosum PGSC0003DMG400010724 I 0.701
SELMODRAFT_80895 Selaginella moellendorffii SELMODRAFT_80895 I 0.701
Solyc09g066350.1 Solanum lycopersicum Solyc09g066350.1 I 0.701
PGSC0003DMG400010309 Solanum tuberosum PGSC0003DMG400010309 I 0.701
TCM_005705 Theobroma cacao TCM_005705 I 0.701
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.700
mgf021973m Mimulus guttatus mgf021973m I 0.700
Pm020605 Prunus mume Pm020605 I 0.699
PRUPE_ppa020642mg Prunus persica PRUPE_ppa020642mg I 0.699
gene08075-v1.0-hybrid Fragaria vesca gene08075-v1.0-hybrid I 0.698
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.697
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.696
Gorai.007G145700 Gossypium raimondii Gorai.007G145700 I 0.696
29900.m001559 Ricinus communis 29900.m001559 I 0.695
Eucgr.E02651 Eucalyptus grandis Eucgr.E02651 I 0.695
Eucgr.E03168 Eucalyptus grandis Eucgr.E03168 I 0.695
AMTR_s00021p00185480 Amborella trichopoda AMTR_s00021p00185480 I 0.695
VIT_10s0003g00580 Vitis vinifera VIT_10s0003g00580 I 0.695
Lus10025430.g Linum usitatissimum Lus10025430.g I 0.694
SapurV1A.0094s0620 Salix purpurea SapurV1A.0094s0620 I 0.694
SapurV1A.1065s0020 Salix purpurea SapurV1A.1065s0020 I 0.694
LPERR02G21480 Leersia perrieri LPERR02G21480 I 0.694
POPTR_0001s11770 Populus trichocarpa POPTR_0001s11770 I 0.694
SapurV1A.0233s0380 Salix purpurea SapurV1A.0233s0380 I 0.694
Aquca_005_00143 Aquilegia coerulea Aquca_005_00143 I 0.692
Si017790m.g Setaria italica Si017790m.g I 0.692
OGLUM02G26870 Oryza glumaepatula OGLUM02G26870 I 0.692
ONIVA02G28840 Oryza nivara ONIVA02G28840 I 0.692
GRMZM2G057386 Zea mays GRMZM2G057386 I 0.692
orange1.1g048608m.g Citrus sinensis orange1.1g048608m.g I 0.692
Pavir.Ab02473 Panicum virgatum Pavir.Ab02473 I 0.692
BGIOSGA008740 Oryza indica BGIOSGA008740 I 0.692
Pavir.Aa01181 Panicum virgatum Pavir.Aa01181 I 0.692
Ciclev10006784m.g Citrus clementina Ciclev10006784m.g I 0.692
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.692
OBART02G26470 Oryza barthii OBART02G26470 I 0.692
ORGLA02G0226700 Oryza glaberrima ORGLA02G0226700 I 0.692
OPUNC02G24090 Oryza punctata OPUNC02G24090 I 0.692
ORUFI02G27860 Oryza rufipogon ORUFI02G27860 I 0.692
30174.m008759 Ricinus communis 30174.m008759 I 0.691
Lus10016210.g Linum usitatissimum Lus10016210.g I 0.691
POPTR_0005s24450 Populus trichocarpa POPTR_0005s24450 I 0.691
MTR_2g015040 Medicago truncatula MTR_2g015040 I 0.690
SapurV1A.0012s0890 Salix purpurea SapurV1A.0012s0890 I 0.690
mgf021215m Mimulus guttatus mgf021215m I 0.690
GLYMA13G30720 Glycine max GLYMA13G30720 I 0.690
PK28774.1 Cannabis sativa PK28774.1 I 0.690
Eucgr.B01541 Eucalyptus grandis Eucgr.B01541 I 0.690
POPTR_0004s05100 Populus trichocarpa POPTR_0004s05100 I 0.690
cassava1608.valid.m1 Manihot esculenta cassava1608.valid.m1 I 0.690
Gorai.007G046000 Gossypium raimondii Gorai.007G046000 I 0.690
GLYMA15G08560 Glycine max GLYMA15G08560 I 0.690
Eucgr.G00943 Eucalyptus grandis Eucgr.G00943 I 0.689
TCM_004062 Theobroma cacao TCM_004062 I 0.689
mgf026487m Mimulus guttatus mgf026487m I 0.688
29584.m000235 Ricinus communis 29584.m000235 I 0.688
TCM_029773 Theobroma cacao TCM_029773 I 0.687
cassava19171.valid.m1 Manihot esculenta cassava19171.valid.m1 I 0.687
Gorai.001G176700 Gossypium raimondii Gorai.001G176700 I 0.687
TCM_004061 Theobroma cacao TCM_004061 I 0.687
Cla010886 Citrullus lanatus Cla010886 I 0.686
MTR_1g070070 Medicago truncatula MTR_1g070070 I 0.686
Cucsa.260030 Cucumis sativus Cucsa.260030 I 0.685
MDP0000178398 Malus domestica MDP0000178398 I 0.685
Cla015064 Citrullus lanatus Cla015064 I 0.685
Ciclev10016995m.g Citrus clementina Ciclev10016995m.g I 0.685
Gorai.008G108500 Gossypium raimondii Gorai.008G108500 I 0.685
orange1.1g031071m.g Citrus sinensis orange1.1g031071m.g I 0.685
Lus10016209.g Linum usitatissimum Lus10016209.g I 0.684
Ca_00359 Cicer arietinum Ca_00359 I 0.684
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I 0.684
ONIVA04G03680 Oryza nivara ONIVA04G03680 I 0.683
OLONG_027600 Oryza longistaminata OLONG_027600 I 0.683
ORGLA04G0041100 Oryza glaberrima ORGLA04G0041100 I 0.683
OS04G0257500 Oryza sativa OS04G0257500 I 0.683
BGIOSGA015474 Oryza indica BGIOSGA015474 I 0.683
OGLUM04G04620 Oryza glumaepatula OGLUM04G04620 I 0.683
OBART04G05450 Oryza barthii OBART04G05450 I 0.683
ORUFI04G06330 Oryza rufipogon ORUFI04G06330 I 0.683
GSMUA_Achr1G15350_001 Musa acuminata GSMUA_Achr1G15350_001 I 0.683
cassava38545.m1 Manihot esculenta cassava38545.m1 I 0.683
LPERR04G03550 Leersia perrieri LPERR04G03550 I 0.683
OB04G14270 Oryza brachyantha OB04G14270 I 0.683
Bra014925 Brassica rapa Bra014925 I 0.682
Bo7g040810 Brassica oleracea Bo7g040810 I 0.682
POPTR_0010s08310 Populus trichocarpa POPTR_0010s08310 I 0.682
VIT_07s0005g03190 Vitis vinifera VIT_07s0005g03190 I 0.682
mgf020878m Mimulus guttatus mgf020878m I 0.682
CM1489.90.nc Lotus japonicus CM1489.90.nc I 0.682
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I 0.681
SapurV1A.0021s0990 Salix purpurea SapurV1A.0021s0990 I 0.681
cassava47034.m1 Manihot esculenta cassava47034.m1 I 0.681
SapurV1A.0292s0010 Salix purpurea SapurV1A.0292s0010 I 0.681
MDP0000907929 Malus domestica MDP0000907929 I 0.681
MDP0000189033 Malus domestica MDP0000189033 I 0.681
MDP0000133485 Malus domestica MDP0000133485 I 0.681
VIT_07s0005g03220 Vitis vinifera VIT_07s0005g03220 I 0.681
Gorai.001G252700 Gossypium raimondii Gorai.001G252700 I 0.680
Cucsa.388540 Cucumis sativus Cucsa.388540 I 0.680
mgf001695m Mimulus guttatus mgf001695m I 0.680
Cla007696 Citrullus lanatus Cla007696 I 0.680
Gorai.001G252900 Gossypium raimondii Gorai.001G252900 I 0.680
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.680
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.680
Gorai.001G051300 Gossypium raimondii Gorai.001G051300 I 0.680
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.680
OMERI03G03710 Oryza meridionalis OMERI03G03710 I 0.680
ERF2_TOBAC Nicotiana tabacum ERF2_TOBAC D 0.679
Lus10016224.g Linum usitatissimum Lus10016224.g I 0.679
Cla015065 Citrullus lanatus Cla015065 I 0.679
Lus10029318.g Linum usitatissimum Lus10029318.g I 0.679
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.679
MDP0000689946 Malus domestica MDP0000689946 I 0.678
Ca_17211 Cicer arietinum Ca_17211 I 0.678
PRUPE_ppa012014mg Prunus persica PRUPE_ppa012014mg I 0.678
MTR_5g085100 Medicago truncatula MTR_5g085100 I 0.678
MDP0000286915 Malus domestica MDP0000286915 I 0.678
Pm010368 Prunus mume Pm010368 I 0.678
Eucgr.E01571 Eucalyptus grandis Eucgr.E01571 I 0.678
MDP0000805422 Malus domestica MDP0000805422 I 0.678
Cucsa.129320 Cucumis sativus Cucsa.129320 I 0.678
Bostr.19424s0319 Boechera stricta Bostr.19424s0319 I 0.677
PRUPE_ppa016384mg Prunus persica PRUPE_ppa016384mg I 0.677
Pm003579 Prunus mume Pm003579 I 0.677