chr5.CM0040.40.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr5.CM0040.40.nd T010201_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.799 0.940
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.799 0.940
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.777 0.880
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.777 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.CM0040.40.nd AP2 37 88

Links

Other AP2 family TFs
Other Lotus japonicus TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_09124 Cicer arietinum Ca_09124 I 0.812
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.811
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.810
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.810
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.804
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.804
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.804
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.803
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.802
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.801
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.799
ERF017 Arabidopsis thaliana AT1G19210 D 0.799
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.799
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.799
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.799
Ca_01683 Cicer arietinum Ca_01683 I 0.799
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.798
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.798
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.798
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.796
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.796
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.795
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.795
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.793
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.793
TCM_037415 Theobroma cacao TCM_037415 I 0.790
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.788
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.786
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.786
Bra031069 Brassica rapa Bra031069 I 0.785
Bo8g102870 Brassica oleracea Bo8g102870 I 0.785
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.784
TCM_037486 Theobroma cacao TCM_037486 I 0.783
Bo8g068370 Brassica oleracea Bo8g068370 I 0.783
Bra016518 Brassica rapa Bra016518 I 0.783
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.782
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.782
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.782
mgf024162m Mimulus guttatus mgf024162m I 0.780
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.779
mgf021940m Mimulus guttatus mgf021940m I 0.778
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.778
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.778
MDP0000704216 Malus domestica MDP0000704216 I 0.778
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.777
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.777
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.777
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.777
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.777
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.777
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.777
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.777
ERF018 Arabidopsis thaliana AT1G74930 D 0.777
Bra015882 Brassica rapa Bra015882 I 0.776
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.775
Pm027117 Prunus mume Pm027117 I 0.775
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.775
29739.m003716 Ricinus communis 29739.m003716 I 0.775
Bo6g119120 Brassica oleracea Bo6g119120 I 0.774
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.771
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.770
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.770
Bo6g086740 Brassica oleracea Bo6g086740 I 0.770
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.770
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.770
Bra003780 Brassica rapa Bra003780 I 0.770
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.770
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.768
MDP0000649022 Malus domestica MDP0000649022 I 0.767
mgf025452m Mimulus guttatus mgf025452m I 0.767
29739.m003647 Ricinus communis 29739.m003647 I 0.766
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.765
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.762
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.762
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.760
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.759
Ca_19295 Cicer arietinum Ca_19295 I 0.759
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.758
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.757
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.757
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.755
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.755
Cla011318 Citrullus lanatus Cla011318 I 0.755
Ca_19296 Cicer arietinum Ca_19296 I 0.754
Bo2g023630 Brassica oleracea Bo2g023630 I 0.752
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.752
Bra020162 Brassica rapa Bra020162 I 0.751
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.751
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.750
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.750
Si019636m.g Setaria italica Si019636m.g I 0.750
Bra025719 Brassica rapa Bra025719 I 0.749
Cla007584 Citrullus lanatus Cla007584 I 0.749
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.744
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.739
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.739
Bra006599 Brassica rapa Bra006599 I 0.738
Bo3g015600 Brassica oleracea Bo3g015600 I 0.738
Bo9g149820 Brassica oleracea Bo9g149820 I 0.737
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.737
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.737
Bra002377 Brassica rapa Bra002377 I 0.737
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.737
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.737
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.737
PK18548.1 Cannabis sativa PK18548.1 I 0.736
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.733
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.732
Ca_19297 Cicer arietinum Ca_19297 I 0.731
ERF016 Arabidopsis thaliana AT5G21960 I 0.730
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.730
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.727
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.727
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.726
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.725
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.716
Si008104m.g Setaria italica Si008104m.g I 0.716
MTR_7g028925 Medicago truncatula MTR_7g028925 I 0.715
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.706
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.706
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.706
Cla022291 Citrullus lanatus Cla022291 I 0.706
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.703
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.703
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.703
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.703
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.703
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.703
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.703
OS02G0781300 Oryza sativa OS02G0781300 I 0.703
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.697
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.697
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.688
AMTR_s00007p00268460 Amborella trichopoda AMTR_s00007p00268460 I 0.687
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.677
Si015027m.g Setaria italica Si015027m.g I 0.677
OB08G24280 Oryza brachyantha OB08G24280 I 0.677
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.677
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.677
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.677
OBART08G16950 Oryza barthii OBART08G16950 I 0.677
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.677
OS08G0454000 Oryza sativa OS08G0454000 I 0.677
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.677
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.677
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.677
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.677