chr6.CM0420.30.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr6.CM0420.30.nd T010212_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN

NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.748 0.820
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN

NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.748 0.820
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH

DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.742 0.820
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW

WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.742 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr6.CM0420.30.nd AP2 18 69

Links

Other AP2 family TFs
Other Lotus japonicus TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29739.m003647 Ricinus communis 29739.m003647 I 0.716
29739.m003716 Ricinus communis 29739.m003716 I 0.734
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.727
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.736
Bo2g023630 Brassica oleracea Bo2g023630 I 0.722
Bo3g015600 Brassica oleracea Bo3g015600 I 0.707
Bo6g086740 Brassica oleracea Bo6g086740 I 0.755
Bo6g119120 Brassica oleracea Bo6g119120 I 0.746
Bo8g068370 Brassica oleracea Bo8g068370 I 0.728
Bo8g102870 Brassica oleracea Bo8g102870 I 0.753
Bo9g149820 Brassica oleracea Bo9g149820 I 0.705
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.705
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.748
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.718
Bra002377 Brassica rapa Bra002377 I 0.705
Bra003780 Brassica rapa Bra003780 I 0.756
Bra006599 Brassica rapa Bra006599 I 0.707
Bra015882 Brassica rapa Bra015882 I 0.742
Bra016518 Brassica rapa Bra016518 I 0.728
Bra020162 Brassica rapa Bra020162 I 0.720
Bra025719 Brassica rapa Bra025719 I 0.717
Bra031069 Brassica rapa Bra031069 I 0.753
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.755
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.742
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.705
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.742
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.755
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.737
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.728
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.736
Ca_01683 Cicer arietinum Ca_01683 I 0.719
Ca_09124 Cicer arietinum Ca_09124 I 0.743
Ca_19295 Cicer arietinum Ca_19295 I 0.741
Ca_19296 Cicer arietinum Ca_19296 I 0.736
Ca_19297 Cicer arietinum Ca_19297 I 0.745
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.685
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.733
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.742
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.736
Cla007584 Citrullus lanatus Cla007584 I 0.720
Cla011318 Citrullus lanatus Cla011318 I 0.711
Cla022291 Citrullus lanatus Cla022291 I 0.708
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.708
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.711
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.700
ERF016 Arabidopsis thaliana AT5G21960 I 0.701
ERF017 Arabidopsis thaliana AT1G19210 D 0.742
ERF018 Arabidopsis thaliana AT1G74930 D 0.748
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.734
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.753
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.739
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.742
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.740
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.718
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.718
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.768
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.750
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.720
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.759
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.752
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.728
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.735
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.725
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.682
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.714
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.733
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.729
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.701
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.694
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.724
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.730
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.730
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.724
MDP0000649022 Malus domestica MDP0000649022 I 0.729
MDP0000704216 Malus domestica MDP0000704216 I 0.736
mgf021940m Mimulus guttatus mgf021940m I 0.746
mgf024162m Mimulus guttatus mgf024162m I 0.748
mgf025452m Mimulus guttatus mgf025452m I 0.733
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.681
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.736
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.744
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.744
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.710
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.741
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.741
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.749
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.748
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.749
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.742
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.706
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.707
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.748
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.678
PK18548.1 Cannabis sativa PK18548.1 I 0.689
Pm027117 Prunus mume Pm027117 I 0.734
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.731
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.736
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.741
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.733
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.734
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.739
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.741
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.727
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.741
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.705
Si019636m.g Setaria italica Si019636m.g I 0.706
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.678
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.748
TCM_037415 Theobroma cacao TCM_037415 I 0.726
TCM_037486 Theobroma cacao TCM_037486 I 0.744
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.750
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.701
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.731
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.684
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.736