chr6.LjT13N05.60.nc (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr6.LjT13N05.60.nc T010214_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK24580.1
M01101_2.00
Cannabis sativa
VGCCGGCM

KGCCGGCB
PBM
Lambert et al.(2019)
pTH11280
0.747 0.878
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN

NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.715 0.673
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.715 0.673
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH

DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.715 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr6.LjT13N05.60.nc AP2 107 158

Links

Other AP2 family TFs
Other Lotus japonicus TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.817
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.817
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.790
Cla008128 Citrullus lanatus Cla008128 I 0.784
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.784
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.762
Ca_05485 Cicer arietinum Ca_05485 I 0.753
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.751
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.751
PK24580.1 Cannabis sativa PK24580.1 D 0.747
chr2.CM0903.260.nd Lotus japonicus chr2.CM0903.260.nd I 0.744
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.733
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.730
MDP0000743350 Malus domestica MDP0000743350 I 0.729
MDP0000119956 Malus domestica MDP0000119956 I 0.729
GLYMA08G30716 Glycine max GLYMA08G30716 I 0.724
Cla021763 Citrullus lanatus Cla021763 I 0.721
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.720
MDP0000759299 Malus domestica MDP0000759299 I 0.718
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.717
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.715
ERF118 Arabidopsis thaliana AT1G68550 D 0.715
gene25185-v1.0-hybrid Fragaria vesca gene25185-v1.0-hybrid I 0.710
Pm029052 Prunus mume Pm029052 I 0.704
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.702
mgf006610m Mimulus guttatus mgf006610m I 0.701
Cucsa.121430 Cucumis sativus Cucsa.121430 N 0.698
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.698
Cla000729 Citrullus lanatus Cla000729 I 0.698
MDP0000166779 Malus domestica MDP0000166779 N 0.693
Carubv10017705m.g Capsella rubella Carubv10017705m.g I 0.692
cassava35757.valid.m1 Manihot esculenta cassava35757.valid.m1 I 0.692
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.692
Cagra.0483s0087 Capsella grandiflora Cagra.0483s0087 I 0.692
gene03751-v1.0-hybrid Fragaria vesca gene03751-v1.0-hybrid I 0.690
PRUPE_ppa008514mg Prunus persica PRUPE_ppa008514mg I 0.688
27524.m000298 Ricinus communis 27524.m000298 I 0.684
cassava43300.valid.m1 Manihot esculenta cassava43300.valid.m1 I 0.684
Bostr.13158s0163 Boechera stricta Bostr.13158s0163 I 0.682
Cla018787 Citrullus lanatus Cla018787 N 0.681
Ca_06446 Cicer arietinum Ca_06446 I 0.679
POPTR_0008s11900 Populus trichocarpa POPTR_0008s11900 I 0.679
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.679
Thhalv10023946m.g Eutrema salsugineum Thhalv10023946m.g I 0.677
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.677
TCM_011811 Theobroma cacao TCM_011811 I 0.677