LjSGA_016572.1 (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 LjSGA_016572.1 T010275_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.747 0.878
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.715 0.673
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.715 0.673
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.715 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_016572.1 AP2 107 158

Links

Other AP2 family TFs
Other Lotus japonicus TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.817
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.817
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.790
Cla008128 Citrullus lanatus Cla008128 I 0.784
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.784
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.762
Ca_05485 Cicer arietinum Ca_05485 I 0.753
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.751
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.751
PK24580.1 Cannabis sativa PK24580.1 D 0.747
chr2.CM0903.260.nd Lotus japonicus chr2.CM0903.260.nd I 0.744
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.733
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.730
MDP0000743350 Malus domestica MDP0000743350 I 0.729
MDP0000119956 Malus domestica MDP0000119956 I 0.729
GLYMA08G30716 Glycine max GLYMA08G30716 I 0.724
Cla021763 Citrullus lanatus Cla021763 I 0.721
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.720
MDP0000759299 Malus domestica MDP0000759299 I 0.718
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.717
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.715
ERF118 Arabidopsis thaliana AT1G68550 D 0.715
gene25185-v1.0-hybrid Fragaria vesca gene25185-v1.0-hybrid I 0.710
Pm029052 Prunus mume Pm029052 I 0.704
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.702
mgf006610m Mimulus guttatus mgf006610m I 0.701
Cucsa.121430 Cucumis sativus Cucsa.121430 N 0.698
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.698
Cla000729 Citrullus lanatus Cla000729 I 0.698
MDP0000166779 Malus domestica MDP0000166779 N 0.693
Carubv10017705m.g Capsella rubella Carubv10017705m.g I 0.692
cassava35757.valid.m1 Manihot esculenta cassava35757.valid.m1 I 0.692
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.692
Cagra.0483s0087 Capsella grandiflora Cagra.0483s0087 I 0.692
gene03751-v1.0-hybrid Fragaria vesca gene03751-v1.0-hybrid I 0.690
PRUPE_ppa008514mg Prunus persica PRUPE_ppa008514mg I 0.688
27524.m000298 Ricinus communis 27524.m000298 I 0.684
cassava43300.valid.m1 Manihot esculenta cassava43300.valid.m1 I 0.684
Bostr.13158s0163 Boechera stricta Bostr.13158s0163 I 0.682
Cla018787 Citrullus lanatus Cla018787 N 0.681
Ca_06446 Cicer arietinum Ca_06446 I 0.679
POPTR_0008s11900 Populus trichocarpa POPTR_0008s11900 I 0.679
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.679
Thhalv10023946m.g Eutrema salsugineum Thhalv10023946m.g I 0.677
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.677
TCM_011811 Theobroma cacao TCM_011811 I 0.677