CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
LjT43F20.80.nd
(
Lotus japonicus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
LjT43F20.80.nd
T010330_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.686
0.840
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.686
0.840
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjT43F20.80.nd
AP2
63
114
RVYHGVRKRNWGKWVSEIREPRKKSRIWLGSFDTPEKAARAHDVAALTIKGP
Links
Other
AP2
family TFs
Other
Lotus japonicus
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy