AMTR_s00007p00238950 (Amborella trichopoda)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
AMTR_s00007p00238950 T010403_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.793 0.793
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.793 0.793
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.793 0.793
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.793 0.793
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.793 0.793
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.793 0.793
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN05438 AP2 66 115
ERN05438 B3 200 309

Links

Other AP2,B3 family TFs
Other Amborella trichopoda TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_20035 Aegilops tauschii F775_20035 N 0.700
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.827
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.807
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.765
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.800
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.793
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.827
RAV2 Arabidopsis thaliana AT1G68840 D 0.833
ARF14 Arabidopsis thaliana AT3G25730 D 0.747
RAV1 Arabidopsis thaliana AT1G13260 D 0.793
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.813
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.787
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.753
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.820
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.753
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.773
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.760
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.755
Bo5g015210 Brassica oleracea Bo5g015210 I 0.800
Bo3g138550 Brassica oleracea Bo3g138550 I 0.800
Bo2g138650 Brassica oleracea Bo2g138650 I 0.740
Bo2g061320 Brassica oleracea Bo2g061320 I 0.780
Bo5g043120 Brassica oleracea Bo5g043120 I 0.780
Bra038346 Brassica rapa Bra038346 I 0.787
Bra011002 Brassica rapa Bra011002 I 0.813
Bra019821 Brassica rapa Bra019821 I 0.800
Bra024735 Brassica rapa Bra024735 I 0.792
Bra025159 Brassica rapa Bra025159 I 0.705
Bra026509 Brassica rapa Bra026509 I 0.733
Bra026917 Brassica rapa Bra026917 I 0.787
PK15652.1 Cannabis sativa PK15652.1 I 0.820
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.800
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.827
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.820
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.760
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.800
Ca_24123 Cicer arietinum Ca_24123 I 0.813
Ca_08436 Cicer arietinum Ca_08436 I 0.793
Cla000872 Citrullus lanatus Cla000872 I 0.772
Cla020675 Citrullus lanatus Cla020675 I 0.820
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.827
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.740
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.827
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.733
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.820
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.791
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.793
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.720
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.713
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.833
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.807
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.800
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.773
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.820
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.700
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.800
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.793
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.787
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.820
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.780
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.820
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.820
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.758
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.772
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.738
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.733
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.707
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.755
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.733
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.765
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.760
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.820
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.785
MDP0000128924 Malus domestica MDP0000128924 I 0.820
MDP0000223137 Malus domestica MDP0000223137 N 0.700
MDP0000153589 Malus domestica MDP0000153589 N 0.713
MDP0000321569 Malus domestica MDP0000321569 N 0.707
MDP0000939633 Malus domestica MDP0000939633 I 0.807
MDP0000945267 Malus domestica MDP0000945267 I 0.747
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.820
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.807
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.807
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.820
mgf019592m Mimulus guttatus mgf019592m I 0.807
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.733
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.733
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.740
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.772
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.773
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.793
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.827
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.733
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.767
OBART01G02610 Oryza barthii OBART01G02610 I 0.753
OBART01G27360 Oryza barthii OBART01G27360 I 0.753
OB01G12600 Oryza brachyantha OB01G12600 I 0.740
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.753
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.753
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.733
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.733
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.753
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.780
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.733
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.767
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.733
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.753
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.753
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.780
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.753
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.733
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.753
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.733
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.753
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.767
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.753
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.780
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.767
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.753
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.753
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.733
OS05G0549800 Oryza sativa OS05G0549800 I 0.773
OS01G0141000 Oryza sativa OS01G0141000 I 0.733
OS01G0140700 Oryza sativa OS01G0140700 I 0.753
OS01G0693400 Oryza sativa OS01G0693400 I 0.753
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.801
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.769
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.740
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.794
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.747
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.725
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.747
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.750
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.801
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.753
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.733
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.760
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.840
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.819
Pm029015 Prunus mume Pm029015 I 0.820
Pm015500 Prunus mume Pm015500 I 0.753
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.820
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.767
29738.m001050 Ricinus communis 29738.m001050 I 0.820
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.820
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.847
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.820
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.813
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.813
Si001909m.g Setaria italica Si001909m.g I 0.773
Si004045m.g Setaria italica Si004045m.g I 0.750
Si024576m.g Setaria italica Si024576m.g I 0.773
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.747
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.807
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.747
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.813
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.812
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.740
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.745
TCM_019508 Theobroma cacao TCM_019508 I 0.707
TCM_011862 Theobroma cacao TCM_011862 I 0.820
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.747
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.747
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.753
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.720
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.747
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.758
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.762
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.747
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.753
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.833
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.753
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.805
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.753
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.760