Bo5g043120 (Brassica oleracea)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Bo5g043120 T010416_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.819 0.819
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.819 0.819
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.819 0.819
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.819 0.819
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.819 0.819
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.819 0.819
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g043120.1 AP2 68 117
Bo5g043120.1 B3 196 309

Links

Other AP2,B3 family TFs
Other Brassica oleracea TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAV2 Arabidopsis thaliana AT1G68840 D 0.887
RAV1 Arabidopsis thaliana AT1G13260 D 0.813
ARF14 Arabidopsis thaliana AT3G25730 D 0.758
Pm029015 Prunus mume Pm029015 I 0.846
Pm015500 Prunus mume Pm015500 I 0.727
Cla020675 Citrullus lanatus Cla020675 I 0.800
Cla000872 Citrullus lanatus Cla000872 I 0.799
Ca_24123 Cicer arietinum Ca_24123 I 0.832
Ca_08436 Cicer arietinum Ca_08436 I 0.827
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.753
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.840
29738.m001050 Ricinus communis 29738.m001050 I 0.853
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.859
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.853
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.753
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.812
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.819
mgf019592m Mimulus guttatus mgf019592m I 0.872
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.738
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.719
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.800
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.804
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.758
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.725
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.771
Si024576m.g Setaria italica Si024576m.g I 0.758
Si004045m.g Setaria italica Si004045m.g I 0.730
Si001909m.g Setaria italica Si001909m.g I 0.732
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.755
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.755
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.953
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.826
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.819
TCM_011862 Theobroma cacao TCM_011862 I 0.832
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.725
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.725
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.755
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.752
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.725
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.725
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.732
TCM_019508 Theobroma cacao TCM_019508 I 0.753
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.765
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.887
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.913
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.732
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.752
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.732
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.750
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.774
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.700
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.718
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.774
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.899
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.820
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.926
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.792
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.867
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.867
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.853
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.745
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.853
MDP0000945267 Malus domestica MDP0000945267 I 0.707
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.853
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.735
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.913
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.785
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.827
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.827
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.899
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.807
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.773
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.707
MDP0000939633 Malus domestica MDP0000939633 I 0.840
MDP0000128924 Malus domestica MDP0000128924 I 0.833
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.812
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.745
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.839
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.826
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.812
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.859
PK15652.1 Cannabis sativa PK15652.1 I 0.820
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.738
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.780
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.765
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.725
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.765
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.826
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.839
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.866
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.833
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.772
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.752
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.738
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.762
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.718
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.725
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.718
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.752
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.820
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.785
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.752
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.887
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.755
Bo5g015210 Brassica oleracea Bo5g015210 I 0.820
Bo3g138550 Brassica oleracea Bo3g138550 I 0.966
Bo2g138650 Brassica oleracea Bo2g138650 I 0.773
Bo2g061320 Brassica oleracea Bo2g061320 I 0.867
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.758
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.718
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.718
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.718
Bra011002 Brassica rapa Bra011002 I 0.920
Bra019821 Brassica rapa Bra019821 I 0.820
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.705
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.720
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.732
Bra038346 Brassica rapa Bra038346 I 0.867
Bra026917 Brassica rapa Bra026917 I 0.826
Bra026509 Brassica rapa Bra026509 I 0.765
Bra025159 Brassica rapa Bra025159 I 0.712
Bra024735 Brassica rapa Bra024735 I 0.993
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.732
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.752
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.705
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.767
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.718
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.718
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.767
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.713
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.718
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.772
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.767
OS01G0140700 Oryza sativa OS01G0140700 I 0.718
OS01G0141000 Oryza sativa OS01G0141000 I 0.718
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.733
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.846
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.872
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.859
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.745
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.819
OS05G0549800 Oryza sativa OS05G0549800 I 0.765
OS01G0693400 Oryza sativa OS01G0693400 I 0.767
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.747
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.758
OBART01G27360 Oryza barthii OBART01G27360 I 0.767
OBART01G02610 Oryza barthii OBART01G02610 I 0.718
OB01G12600 Oryza brachyantha OB01G12600 I 0.750
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.813
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.833
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.732
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.705
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.752
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.718
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.752
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.767
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.718
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.718
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.772
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.767
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.718
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.718
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.772
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.752