BRADI2G47220 (Brachypodium distachyon)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
BRADI2G47220 T010432_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.776 0.776
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.776 0.776
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.776 0.776
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.776 0.776
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.776 0.776
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.776 0.776
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.769 0.769
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G47220.1 AP2 73 122
BRADI2G47220.1 B3 215 327

Links

Other AP2,B3 family TFs
Other Brachypodium distachyon TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.912
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.911
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.911
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.911
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.911
OBART01G27360 Oryza barthii OBART01G27360 I 0.911
OS01G0693400 Oryza sativa OS01G0693400 I 0.911
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.911
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.898
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.898
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.891
OS05G0549800 Oryza sativa OS05G0549800 I 0.891
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.891
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.891
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.884
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.884
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.884
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.871
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.871
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.870
Si024576m.g Setaria italica Si024576m.g I 0.864
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.864
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.852
Si004045m.g Setaria italica Si004045m.g I 0.850
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.850
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.844
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.837
Pm029015 Prunus mume Pm029015 I 0.816
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.816
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.816
MDP0000128924 Malus domestica MDP0000128924 I 0.803
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.803
Ca_08436 Cicer arietinum Ca_08436 I 0.803
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.803
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.803
Ca_24123 Cicer arietinum Ca_24123 I 0.796
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.796
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.796
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.796
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.796
PK15652.1 Cannabis sativa PK15652.1 I 0.793
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.793
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.789
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.789
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.789
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.789
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.789
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.789
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.789
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.789
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.789
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.787
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.787
MDP0000939633 Malus domestica MDP0000939633 I 0.787
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.786
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.782
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.782
TCM_011862 Theobroma cacao TCM_011862 I 0.782
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.782
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.782
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.782
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.782
mgf019592m Mimulus guttatus mgf019592m I 0.782
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.782
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.782
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.782
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.782
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.782
29738.m001050 Ricinus communis 29738.m001050 I 0.780
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.779
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.776
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.776
Bo5g015210 Brassica oleracea Bo5g015210 I 0.776
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.776
RAV2 Arabidopsis thaliana AT1G68840 D 0.776
Bra019821 Brassica rapa Bra019821 I 0.776
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.776
Cla020675 Citrullus lanatus Cla020675 I 0.773
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.773
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.769
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.769
OB01G12600 Oryza brachyantha OB01G12600 I 0.769
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.769
Bra026917 Brassica rapa Bra026917 I 0.769
ARF14 Arabidopsis thaliana AT3G25730 D 0.769
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.769
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.769
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.769
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.769
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.769
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.769
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.767
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.767
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.767
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.765
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.762
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.762
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.762
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.762
RAV1 Arabidopsis thaliana AT1G13260 D 0.760
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.760
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.758
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.757
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.755
OBART01G02610 Oryza barthii OBART01G02610 I 0.755
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.755
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.755
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.755
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.755
Bo3g138550 Brassica oleracea Bo3g138550 I 0.755
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.755
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.755
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.755
Bo5g043120 Brassica oleracea Bo5g043120 I 0.755
OS01G0140700 Oryza sativa OS01G0140700 I 0.755
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.755
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.755
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.755
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.755
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.755
Bra024735 Brassica rapa Bra024735 I 0.755
Si001909m.g Setaria italica Si001909m.g I 0.755
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.753
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.753
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.752
Cla000872 Citrullus lanatus Cla000872 I 0.752
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.750
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.748
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.748
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.748
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.748
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.748
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.748
Bra038346 Brassica rapa Bra038346 I 0.748
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.748
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.748
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.748
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.742
OS01G0141000 Oryza sativa OS01G0141000 I 0.742
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.742
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.742
Bra026509 Brassica rapa Bra026509 I 0.742
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.742
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.742
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.742
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.742
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.742
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.742
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.742
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.742
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.742
Bra011002 Brassica rapa Bra011002 I 0.740
Pm015500 Prunus mume Pm015500 I 0.735
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.735
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.735
Bo2g138650 Brassica oleracea Bo2g138650 I 0.733
Bo2g061320 Brassica oleracea Bo2g061320 I 0.733
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.732
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.728
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.727
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.725
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.720
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.707
SELMODRAFT_66538 Selaginella moellendorffii SELMODRAFT_66538 N 0.707
SELMODRAFT_71153 Selaginella moellendorffii SELMODRAFT_71153 N 0.707
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.701
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.700