GSMUA_Achr8G18260_001 (Musa acuminata)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
GSMUA_Achr8G18260_001 T010455_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.759 0.759
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.759 0.759
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.759 0.759
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.759 0.759
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.759 0.759
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.759 0.759
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr8P18260_001 AP2 67 111
GSMUA_Achr8P18260_001 B3 156 261

Links

Other AP2,B3 family TFs
Other Musa acuminata TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.807
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.800
Pm029015 Prunus mume Pm029015 I 0.800
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.793
mgf019592m Mimulus guttatus mgf019592m I 0.793
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.785
MDP0000128924 Malus domestica MDP0000128924 I 0.780
TCM_011862 Theobroma cacao TCM_011862 I 0.779
MDP0000939633 Malus domestica MDP0000939633 I 0.773
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.772
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.772
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.772
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.772
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.766
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.766
Ca_24123 Cicer arietinum Ca_24123 I 0.766
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.765
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.760
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.760
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.759
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.759
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.759
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.759
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.759
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.759
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.759
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.753
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.753
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.753
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.753
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.752
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.752
OS05G0549800 Oryza sativa OS05G0549800 I 0.752
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.752
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.752
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.752
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.752
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.752
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.752
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.752
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.747
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.747
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.747
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.747
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.745
Bra026917 Brassica rapa Bra026917 I 0.745
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.742
29738.m001050 Ricinus communis 29738.m001050 I 0.740
PK15652.1 Cannabis sativa PK15652.1 I 0.740
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.740
Si024576m.g Setaria italica Si024576m.g I 0.738
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.738
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.738
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.738
Si004045m.g Setaria italica Si004045m.g I 0.736
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.735
Ca_08436 Cicer arietinum Ca_08436 I 0.733
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.733
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.733
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.733
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.733
RAV1 Arabidopsis thaliana AT1G13260 D 0.733
Cla020675 Citrullus lanatus Cla020675 I 0.733
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.733
OS01G0693400 Oryza sativa OS01G0693400 I 0.733
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.733
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.733
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.733
OBART01G27360 Oryza barthii OBART01G27360 I 0.733
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.733
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.733
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.732
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.732
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.732
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.731
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.731
Bo3g138550 Brassica oleracea Bo3g138550 I 0.731
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.731
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.727
RAV2 Arabidopsis thaliana AT1G68840 D 0.727
Bra019821 Brassica rapa Bra019821 I 0.727
Bo5g015210 Brassica oleracea Bo5g015210 I 0.727
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.727
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.727
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.727
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.725
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.725
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.724
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.720
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.720
Bo5g043120 Brassica oleracea Bo5g043120 I 0.718
Bra024735 Brassica rapa Bra024735 I 0.718
OBART01G02610 Oryza barthii OBART01G02610 I 0.717
Si001909m.g Setaria italica Si001909m.g I 0.717
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.717
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.717
OS01G0140700 Oryza sativa OS01G0140700 I 0.717
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.717
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.717
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.717
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.717
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.717
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.716
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.714
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.713
Bra038346 Brassica rapa Bra038346 I 0.713
Bo2g061320 Brassica oleracea Bo2g061320 I 0.713
Bra011002 Brassica rapa Bra011002 I 0.713
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.711
Cla000872 Citrullus lanatus Cla000872 I 0.711
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.710
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.710
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.709
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.708
Pm015500 Prunus mume Pm015500 I 0.707
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.707
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.705
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.703
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.703
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.703
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.701