GSMUA_AchrUn_randomG06880_001 (Musa acuminata)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
GSMUA_AchrUn_randomG06880_001 T010457_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.752 0.752
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.752 0.752
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.752 0.752
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.752 0.752
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.752 0.752
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.752 0.752
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_AchrUn_randomP06880_001 AP2 58 101
GSMUA_AchrUn_randomP06880_001 B3 145 247

Links

Other AP2,B3 family TFs
Other Musa acuminata TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.824
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.794
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.787
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.787
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.780
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.773
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.773
Ca_24123 Cicer arietinum Ca_24123 I 0.773
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.759
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.759
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.759
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.759
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.755
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.752
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.752
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.745
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.745
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.738
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.738
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.738
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.738
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.738
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.733
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.732
mgf019592m Mimulus guttatus mgf019592m I 0.731
OS05G0549800 Oryza sativa OS05G0549800 I 0.731
Cla020675 Citrullus lanatus Cla020675 I 0.727
RAV2 Arabidopsis thaliana AT1G68840 D 0.727
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.727
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.727
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.727
Si024576m.g Setaria italica Si024576m.g I 0.726
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.726
Bo3g138550 Brassica oleracea Bo3g138550 I 0.723
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.723
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.723
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.720
PK15652.1 Cannabis sativa PK15652.1 I 0.720
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.720
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.720
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.719
ARF14 Arabidopsis thaliana AT3G25730 D 0.716
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.715
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.713
MDP0000128924 Malus domestica MDP0000128924 I 0.713
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.713
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.711
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.707
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.707
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.707
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.707
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.707
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.707
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.707
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.707
RAV1 Arabidopsis thaliana AT1G13260 D 0.707
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.707
Ca_08436 Cicer arietinum Ca_08436 I 0.707
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.705
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.705
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.705
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.702
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.702
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.700
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.700
TCM_011862 Theobroma cacao TCM_011862 I 0.700
Pm029015 Prunus mume Pm029015 I 0.700
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.700
Bra011002 Brassica rapa Bra011002 I 0.700
29738.m001050 Ricinus communis 29738.m001050 I 0.700
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.700
MDP0000939633 Malus domestica MDP0000939633 I 0.700
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.700
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.700
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.700