MTR_1g093600 (Medicago truncatula)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
MTR_1g093600 T010467_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.840 0.840
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.840 0.840
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.840 0.840
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.840 0.840
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.840 0.840
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.840 0.840
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES62073 AP2 62 111
AES62073 B3 192 308

Links

Other AP2,B3 family TFs
Other Medicago truncatula TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ca_08436 Cicer arietinum Ca_08436 I 0.967
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.947
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.933
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.900
MDP0000128924 Malus domestica MDP0000128924 I 0.887
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.887
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.880
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.880
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.880
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.879
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.873
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.873
MDP0000939633 Malus domestica MDP0000939633 I 0.873
Pm029015 Prunus mume Pm029015 I 0.867
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.867
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.867
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.867
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.867
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.867
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.867
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.867
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.867
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.860
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.860
29738.m001050 Ricinus communis 29738.m001050 I 0.860
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.860
Ca_24123 Cicer arietinum Ca_24123 I 0.860
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.860
RAV2 Arabidopsis thaliana AT1G68840 D 0.860
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.853
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.853
TCM_011862 Theobroma cacao TCM_011862 I 0.853
PK15652.1 Cannabis sativa PK15652.1 I 0.853
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.853
Cla020675 Citrullus lanatus Cla020675 I 0.847
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.847
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.847
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.847
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.847
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.847
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.847
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.847
mgf019592m Mimulus guttatus mgf019592m I 0.840
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.840
RAV1 Arabidopsis thaliana AT1G13260 D 0.840
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.840
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.840
Bra011002 Brassica rapa Bra011002 I 0.840
Bo5g043120 Brassica oleracea Bo5g043120 I 0.833
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.833
Bo5g015210 Brassica oleracea Bo5g015210 I 0.833
Bra024735 Brassica rapa Bra024735 I 0.833
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.833
Bra026917 Brassica rapa Bra026917 I 0.833
Bra019821 Brassica rapa Bra019821 I 0.833
Bo3g138550 Brassica oleracea Bo3g138550 I 0.833
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.833
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.829
Bra038346 Brassica rapa Bra038346 I 0.827
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.827
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.827
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.820
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.820
Cla000872 Citrullus lanatus Cla000872 I 0.820
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.820
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.820
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.813
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.813
Bo2g061320 Brassica oleracea Bo2g061320 I 0.813
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.813
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.807
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.807
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.807
Si024576m.g Setaria italica Si024576m.g I 0.807
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.807
OS05G0549800 Oryza sativa OS05G0549800 I 0.800
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.799
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.795
OBART01G27360 Oryza barthii OBART01G27360 I 0.795
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.795
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.795
OS01G0693400 Oryza sativa OS01G0693400 I 0.795
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.795
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.795
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.793
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.793
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.793
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.793
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.793
Bo2g138650 Brassica oleracea Bo2g138650 I 0.793
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.793
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.787
ARF14 Arabidopsis thaliana AT3G25730 D 0.787
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.787
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.780
Bra026509 Brassica rapa Bra026509 I 0.780
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.780
OB01G12600 Oryza brachyantha OB01G12600 I 0.780
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.780
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.778
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.773
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.773
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.773
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.767
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.767
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.767
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.760
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.760
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.760
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.760
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.760
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.760
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.753
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.753
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.753
Si004045m.g Setaria italica Si004045m.g I 0.753
Si001909m.g Setaria italica Si001909m.g I 0.753
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.753
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.753
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.753
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.753
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.753
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.747
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.747
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.747
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
Pm015500 Prunus mume Pm015500 I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
OBART01G02610 Oryza barthii OBART01G02610 I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.747
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.747
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.747
OS01G0140700 Oryza sativa OS01G0140700 I 0.747
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.747
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.740
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.740
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.740
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.740
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.740
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.740
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.740
TCM_019508 Theobroma cacao TCM_019508 I 0.740
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.740
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.738
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.733
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.733
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.733
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.733
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.733
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.733
MDP0000945267 Malus domestica MDP0000945267 I 0.733
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.732
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.727
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.720
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.707
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.707
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.707
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.707
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.707
SELMODRAFT_66538 Selaginella moellendorffii SELMODRAFT_66538 N 0.700
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.700
MDP0000153589 Malus domestica MDP0000153589 N 0.700
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.700
SELMODRAFT_71153 Selaginella moellendorffii SELMODRAFT_71153 N 0.700