OB01G12600 (Oryza brachyantha)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		OB01G12600 T010469_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.764 0.764
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.764 0.764
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.764 0.764
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.764 0.764
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.764 0.764
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.764 0.764
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.736 0.736
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB01G12600.1 AP2 51 100
OB01G12600.1 B3 163 273

Links

Other AP2,B3 family TFs
Other Oryza brachyantha TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.952
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.926
OS01G0140700 Oryza sativa OS01G0140700 I 0.926
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.926
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.926
OBART01G02610 Oryza barthii OBART01G02610 I 0.926
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.926
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.926
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.926
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.893
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.885
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.879
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.879
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.878
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.872
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.872
OS01G0141000 Oryza sativa OS01G0141000 I 0.872
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.872
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.872
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.872
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.860
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.845
Si001909m.g Setaria italica Si001909m.g I 0.845
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.844
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.838
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.838
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.838
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.833
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.832
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.831
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.823
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.819
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.819
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.818
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.818
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.818
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.818
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.812
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.811
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.805
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.804
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.799
MDP0000128924 Malus domestica MDP0000128924 I 0.797
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.791
PK15652.1 Cannabis sativa PK15652.1 I 0.787
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.784
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.784
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.784
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.784
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.784
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.784
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.784
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.781
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.781
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.780
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.780
MDP0000939633 Malus domestica MDP0000939633 I 0.780
Cla020675 Citrullus lanatus Cla020675 I 0.780
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.779
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.777
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.777
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.777
mgf019592m Mimulus guttatus mgf019592m I 0.777
Pm029015 Prunus mume Pm029015 I 0.777
Ca_24123 Cicer arietinum Ca_24123 I 0.777
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.777
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.777
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.774
OS01G0693400 Oryza sativa OS01G0693400 I 0.774
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.774
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.774
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.774
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.774
OBART01G27360 Oryza barthii OBART01G27360 I 0.774
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.773
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.773
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.770
Si024576m.g Setaria italica Si024576m.g I 0.770
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.770
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.770
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.770
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.770
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.770
OS05G0549800 Oryza sativa OS05G0549800 I 0.770
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.769
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.769
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.767
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.767
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.767
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.767
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.767
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.765
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.765
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.765
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.764
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.764
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.764
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.764
TCM_011862 Theobroma cacao TCM_011862 I 0.764
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.764
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.760
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.760
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.760
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.760
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.760
29738.m001050 Ricinus communis 29738.m001050 I 0.760
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.758
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.757
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.757
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.757
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.757
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.757
Si004045m.g Setaria italica Si004045m.g I 0.757
Bra026917 Brassica rapa Bra026917 I 0.757
Si012228m.g Setaria italica Si012228m.g N 0.756
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.753
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.753
RAV2 Arabidopsis thaliana AT1G68840 D 0.753
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.753
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.753
Ca_08436 Cicer arietinum Ca_08436 I 0.753
RAV1 Arabidopsis thaliana AT1G13260 D 0.753
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.753
Bo3g138550 Brassica oleracea Bo3g138550 I 0.750
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.750
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.750
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.750
Bo5g043120 Brassica oleracea Bo5g043120 I 0.750
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.750
Bo5g015210 Brassica oleracea Bo5g015210 I 0.747
Bra019821 Brassica rapa Bra019821 I 0.747
Bra024735 Brassica rapa Bra024735 I 0.745
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.745
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.745
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.743
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.743
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.740
Cla000872 Citrullus lanatus Cla000872 I 0.738
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.738
ARF14 Arabidopsis thaliana AT3G25730 D 0.736
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.736
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.736
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.736
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.735
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.733
Bra038346 Brassica rapa Bra038346 I 0.733
Bo2g061320 Brassica oleracea Bo2g061320 I 0.733
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.729
F775_20035 Aegilops tauschii F775_20035 N 0.727
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.723
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.723
Bra026509 Brassica rapa Bra026509 I 0.723
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.720
Bo2g138650 Brassica oleracea Bo2g138650 I 0.720
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.716
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.714
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.714
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.709
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.700
Pm015500 Prunus mume Pm015500 I 0.700