OGLUM05G26380 (Oryza glumaepatula)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
OGLUM05G26380 T010474_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.785 0.785
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.785 0.785
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.785 0.785
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.785 0.785
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.785 0.785
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.785 0.785
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.752 0.752
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM05G26380.1 AP2 74 123
OGLUM05G26380.1 B3 201 321

Links

Other AP2,B3 family TFs
Other Oryza glumaepatula TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 1.000
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.980
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.980
OS05G0549800 Oryza sativa OS05G0549800 I 0.980
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.980
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.938
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.932
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.925
Si024576m.g Setaria italica Si024576m.g I 0.925
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.919
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.913
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.912
OBART01G27360 Oryza barthii OBART01G27360 I 0.904
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.904
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.904
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.904
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.904
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.904
OS01G0693400 Oryza sativa OS01G0693400 I 0.904
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.899
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.897
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.897
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.891
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.889
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.872
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.865
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.856
Si004045m.g Setaria italica Si004045m.g I 0.851
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.851
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.827
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.827
Pm029015 Prunus mume Pm029015 I 0.820
MDP0000128924 Malus domestica MDP0000128924 I 0.820
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.820
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.819
MDP0000939633 Malus domestica MDP0000939633 I 0.813
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.813
PK15652.1 Cannabis sativa PK15652.1 I 0.813
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.812
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.810
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.807
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.807
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.807
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.807
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.807
Ca_24123 Cicer arietinum Ca_24123 I 0.807
Ca_08436 Cicer arietinum Ca_08436 I 0.807
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.805
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.800
29738.m001050 Ricinus communis 29738.m001050 I 0.800
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.800
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.800
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.800
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.800
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.800
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.799
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.799
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.793
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.793
TCM_011862 Theobroma cacao TCM_011862 I 0.793
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.793
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.793
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.793
RAV2 Arabidopsis thaliana AT1G68840 D 0.793
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.792
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.789
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.787
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.787
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.787
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.787
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.787
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.787
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.787
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.787
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.787
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.787
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.787
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.785
OB01G12600 Oryza brachyantha OB01G12600 I 0.784
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.782
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.782
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.781
Bo5g015210 Brassica oleracea Bo5g015210 I 0.780
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.780
RAV1 Arabidopsis thaliana AT1G13260 D 0.780
Bra019821 Brassica rapa Bra019821 I 0.780
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.780
Cla020675 Citrullus lanatus Cla020675 I 0.780
Bra026917 Brassica rapa Bra026917 I 0.780
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.780
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.780
mgf019592m Mimulus guttatus mgf019592m I 0.780
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.779
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.779
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.779
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.778
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.776
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.774
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.774
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.774
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.774
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.774
OBART01G02610 Oryza barthii OBART01G02610 I 0.774
OS01G0140700 Oryza sativa OS01G0140700 I 0.774
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.774
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.773
Bra011002 Brassica rapa Bra011002 I 0.773
Bo3g138550 Brassica oleracea Bo3g138550 I 0.773
Bra024735 Brassica rapa Bra024735 I 0.772
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.772
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.772
Bo5g043120 Brassica oleracea Bo5g043120 I 0.772
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.771
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.770
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.769
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.769
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.767
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.765
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.765
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.765
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.765
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.764
Bra038346 Brassica rapa Bra038346 I 0.760
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.760
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.760
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.759
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.758
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.757
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.755
Si001909m.g Setaria italica Si001909m.g I 0.753
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.753
Bo2g061320 Brassica oleracea Bo2g061320 I 0.753
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.753
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.753
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.753
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.753
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.753
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.752
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.750
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.748
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.748
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
ARF14 Arabidopsis thaliana AT3G25730 D 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.747
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.747
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.745
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.743
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.740
Bo2g138650 Brassica oleracea Bo2g138650 I 0.740
Cla000872 Citrullus lanatus Cla000872 I 0.738
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.738
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.738
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.733
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.733
TCM_019508 Theobroma cacao TCM_019508 I 0.733
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.731
Bra026509 Brassica rapa Bra026509 I 0.727
Pm015500 Prunus mume Pm015500 I 0.727
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.720
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.713
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.713
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.707
GSMUA_Achr9G21470_001 Musa acuminata GSMUA_Achr9G21470_001 N 0.705
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.703