ORUFI01G02680 (Oryza rufipogon)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
ORUFI01G02680 T010491_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.740 0.740
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.740 0.740
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.740 0.740
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.740 0.740
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.740 0.740
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.740 0.740
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI01G02680.1 AP2 67 116
ORUFI01G02680.1 B3 182 294

Links

Other AP2,B3 family TFs
Other Oryza rufipogon TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA002748 Oryza indica BGIOSGA002748 I 1.000
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 1.000
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 1.000
OS01G0141000 Oryza sativa OS01G0141000 I 1.000
BGIOSGA002753 Oryza indica BGIOSGA002753 I 1.000
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.987
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.953
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.905
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.899
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.893
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.893
OB01G12600 Oryza brachyantha OB01G12600 I 0.872
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.867
Si001909m.g Setaria italica Si001909m.g I 0.860
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.856
OPUNC01G02270 Oryza punctata OPUNC01G02270 N 0.853
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.846
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.846
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.841
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.840
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.838
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.833
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.833
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.833
OS01G0140700 Oryza sativa OS01G0140700 I 0.833
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.833
OBART01G02610 Oryza barthii OBART01G02610 I 0.833
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.833
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.833
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.833
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.827
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.827
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.827
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.827
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.826
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.826
F775_20035 Aegilops tauschii F775_20035 N 0.820
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.819
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.813
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.812
Si004045m.g Setaria italica Si004045m.g I 0.811
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.807
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.805
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.804
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.803
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.800
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.796
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.780
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.780
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.767
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.767
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.760
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.760
PK15652.1 Cannabis sativa PK15652.1 I 0.760
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.760
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.760
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.760
OS01G0693400 Oryza sativa OS01G0693400 I 0.760
MDP0000128924 Malus domestica MDP0000128924 I 0.760
OBART01G27360 Oryza barthii OBART01G27360 I 0.760
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.755
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.753
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.753
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.752
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.752
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.747
Si024576m.g Setaria italica Si024576m.g I 0.747
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.747
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.747
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.747
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.747
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.747
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.747
MDP0000939633 Malus domestica MDP0000939633 I 0.747
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.747
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.747
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.747
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.747
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.747
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.747
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.747
Cla020675 Citrullus lanatus Cla020675 I 0.747
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.747
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.747
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.747
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.747
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.747
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.747
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.747
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.745
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.743
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.742
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.742
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.740
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.740
Pm029015 Prunus mume Pm029015 I 0.740
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.740
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.740
mgf019592m Mimulus guttatus mgf019592m I 0.740
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.740
Si012228m.g Setaria italica Si012228m.g N 0.740
RAV1 Arabidopsis thaliana AT1G13260 D 0.740
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.738
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.733
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.733
Bra019821 Brassica rapa Bra019821 I 0.733
Ca_24123 Cicer arietinum Ca_24123 I 0.733
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.733
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.733
Bra026917 Brassica rapa Bra026917 I 0.733
OS05G0549800 Oryza sativa OS05G0549800 I 0.733
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.733
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.733
RAV2 Arabidopsis thaliana AT1G68840 D 0.733
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.733
TCM_011862 Theobroma cacao TCM_011862 I 0.733
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.733
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.733
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.733
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.733
Bo5g015210 Brassica oleracea Bo5g015210 I 0.733
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.732
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.732
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.732
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.732
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.727
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.727
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.727
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.727
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.727
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.727
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.727
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.727
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.727
ARF14 Arabidopsis thaliana AT3G25730 D 0.727
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.727
29738.m001050 Ricinus communis 29738.m001050 I 0.727
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.725
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.723
Ca_08436 Cicer arietinum Ca_08436 I 0.720
Bo5g043120 Brassica oleracea Bo5g043120 I 0.718
Bra024735 Brassica rapa Bra024735 I 0.718
Cla000872 Citrullus lanatus Cla000872 I 0.718
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.718
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.714
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.713
Bo3g138550 Brassica oleracea Bo3g138550 I 0.713
Bra011002 Brassica rapa Bra011002 I 0.713
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.713
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.707
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.707
Bo2g138650 Brassica oleracea Bo2g138650 I 0.707
Bo2g061320 Brassica oleracea Bo2g061320 I 0.707
Bra038346 Brassica rapa Bra038346 I 0.707
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.707
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.707
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.705
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.700
Bra026509 Brassica rapa Bra026509 I 0.700