PGSC0003DMG400000811 (Solanum tuberosum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
PGSC0003DMG400000811 T010497_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.833 0.833
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.833 0.833
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.833 0.833
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.833 0.833
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.833 0.833
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.833 0.833
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.807 0.807
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400002125 AP2 71 120
PGSC0003DMT400002125 B3 207 310

Links

Other AP2,B3 family TFs
Other Solanum tuberosum TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAV2 Arabidopsis thaliana AT1G68840 D 0.833
RAV1 Arabidopsis thaliana AT1G13260 D 0.833
ARF14 Arabidopsis thaliana AT3G25730 D 0.807
Pm029015 Prunus mume Pm029015 I 0.893
Pm015500 Prunus mume Pm015500 I 0.747
Cla020675 Citrullus lanatus Cla020675 I 0.873
Cla000872 Citrullus lanatus Cla000872 I 0.792
Ca_24123 Cicer arietinum Ca_24123 I 0.853
Ca_08436 Cicer arietinum Ca_08436 I 0.820
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.787
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.893
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.793
29738.m001050 Ricinus communis 29738.m001050 I 0.867
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.887
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.813
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.833
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.840
mgf019592m Mimulus guttatus mgf019592m I 0.873
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.766
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.753
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.873
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.804
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.907
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.758
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.753
Si024576m.g Setaria italica Si024576m.g I 0.815
Si004045m.g Setaria italica Si004045m.g I 0.797
Si001909m.g Setaria italica Si001909m.g I 0.767
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.776
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.776
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.813
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.840
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.805
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.826
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.987
TCM_011862 Theobroma cacao TCM_011862 I 0.873
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.733
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.753
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.782
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.789
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.753
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.753
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.765
TCM_019508 Theobroma cacao TCM_019508 I 0.760
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.780
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.827
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.733
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.793
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.785
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.732
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.804
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.784
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.815
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.754
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.757
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.778
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.815
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.773
PK15652.1 Cannabis sativa PK15652.1 I 0.900
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.833
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.833
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.807
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.820
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.880
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.880
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.873
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.900
MDP0000945267 Malus domestica MDP0000945267 I 0.747
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.900
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.769
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.840
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.807
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.840
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.840
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.833
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.827
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.820
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.727
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.713
MDP0000939633 Malus domestica MDP0000939633 I 0.880
MDP0000128924 Malus domestica MDP0000128924 I 0.900
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.833
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.792
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.860
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.873
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.860
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.900
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.813
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.779
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.792
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.767
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.805
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.827
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.832
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.867
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.853
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.819
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.847
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.812
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.747
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.707
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.772
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.796
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.847
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.823
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.785
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.785
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.747
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.796
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.801
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.780
Bo3g138550 Brassica oleracea Bo3g138550 I 0.807
Bo2g138650 Brassica oleracea Bo2g138650 I 0.787
Bo2g061320 Brassica oleracea Bo2g061320 I 0.787
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.792
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.767
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.767
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.747
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.750
Bo5g015210 Brassica oleracea Bo5g015210 I 0.827
Bo5g043120 Brassica oleracea Bo5g043120 I 0.819
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.764
Bra038346 Brassica rapa Bra038346 I 0.787
Bra026917 Brassica rapa Bra026917 I 0.820
Bra026509 Brassica rapa Bra026509 I 0.773
Bra025159 Brassica rapa Bra025159 I 0.750
Bra024735 Brassica rapa Bra024735 I 0.819
Bra019821 Brassica rapa Bra019821 I 0.827
Bra011002 Brassica rapa Bra011002 I 0.807
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.813
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.773
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.740
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.801
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.767
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.747
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.793
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.801
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.792
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.801
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.767
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.747
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.767
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.893
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.893
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.873
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.795
OS05G0549800 Oryza sativa OS05G0549800 I 0.793
OS01G0693400 Oryza sativa OS01G0693400 I 0.801
OS01G0141000 Oryza sativa OS01G0141000 I 0.767
OS01G0140700 Oryza sativa OS01G0140700 I 0.747
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.801
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.774
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.796
OB01G12600 Oryza brachyantha OB01G12600 I 0.784
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.847
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.833
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.765
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.733
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.767
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.752
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.779
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.812
OBART01G02610 Oryza barthii OBART01G02610 I 0.747
OBART01G27360 Oryza barthii OBART01G27360 I 0.801
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.800
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.801
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.767
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.747
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.800
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.801
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.747
F775_20035 Aegilops tauschii F775_20035 N 0.700
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.713
GSMUA_Achr9G21470_001 Musa acuminata GSMUA_Achr9G21470_001 N 0.719
MDP0000321569 Malus domestica MDP0000321569 N 0.700