CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0018s11780
(
Populus trichocarpa
)
AP2,B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
POPTR_0018s11780
T010503_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0018s11780.1
AP2
45
94
SKFKGVVPLPNGHWGCQIYANHQRIWLGTFKSEKEAAMAYDSAAIKLRSG
POPTR_0018s11780.1
B3
168
209
FQKELTPSDVGKLNRIVIPKKYAIKYFPHISESAEEVDGHSL
Links
Other
AP2,B3
family TFs
Other
Populus trichocarpa
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla019009
Citrullus lanatus
Cla019009
N
0.791
Cucsa.350980
Cucumis sativus
Cucsa.350980
N
0.780
Ciclev10010403m.g
Citrus clementina
Ciclev10010403m.g
N
0.758
SapurV1A.2134s0020
Salix purpurea
SapurV1A.2134s0020
N
0.758
Gorai.013G249100
Gossypium raimondii
Gorai.013G249100
N
0.747
Eucgr.C00358
Eucalyptus grandis
Eucgr.C00358
N
0.747
orange1.1g018549m.g
Citrus sinensis
orange1.1g018549m.g
N
0.736
MDP0000485280
Malus domestica
MDP0000485280
N
0.725
28008.m000029
Ricinus communis
28008.m000029
N
0.725
VIT_11s0037g00010
Vitis vinifera
VIT_11s0037g00010
N
0.714
LjSGA_031594.1
Lotus japonicus
LjSGA_031594.1
N
0.703
Lus10036282.g
Linum usitatissimum
Lus10036282.g
N
0.703
POPTR_0003s21810
Populus trichocarpa
POPTR_0003s21810
N
0.703